Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4212 113 3e-20 seq4581 104 1e-17 seq4218 91.5 9e-14 >seq4212 Length=20478 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || || | ||||| ||||||||||| || || || || ||||| Sbjct 2367 CCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGAC 2308 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || || |||||||| || | |||||| || |||||||| Sbjct 2307 AGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 2248 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || || | || |||||| |||||| Sbjct 2247 ATACCCTCCTTGTC-CTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCAC 2189 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || |||||||| || | || || || |||||||||||| Sbjct 2188 CTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 2140 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | || | || |||||| |||||| |||||||| || || || Sbjct 2140 GCCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 2081 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || ||||||| || || || ||||| || || | ||||| ||||| || || Sbjct 2080 AAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 2021 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| || | || ||| | || ||||| ||||| Sbjct 2020 AATGCCCTCCTTGTCTTGGATC-TTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCA 1962 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || ||||| || || || | || || || || |||||||| Sbjct 1961 CTTCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 >seq4581 Length=31643 Score = 104 bits (114), Expect = 1e-17 Identities = 115/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | ||| |||||||||| || || || | | ||| ||||| || | Sbjct 30933 CCTCCTCTCAGTCTCAAGACCAAATGGATGGTACTTTCATATGCAATATTATATTCCGCG 30992 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 |||||||| ||||||| ||||| |||||||| |||| ||||| ||||||||||| Sbjct 30993 AGTGTTCGGTCGTCTTGAAGTTCCCCTCCGGCAAAGATTAGGCGCTGCTGGTCCGGCGGA 31052 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAA 34631 | ||| || |||||| ||| | || ||||||| Sbjct 31053 ATTCCTTCTTTGTCT-TGAACCTTGGTTTTAA 31083 >seq4218 Length=3162 Score = 91.5 bits (100), Expect = 9e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || ||| |||||||||| || |||||| ||| |||||||| | Sbjct 3150 CCCCCTCTCAGTTTCAAGACCAAATGGATGGTATCATCCTTTGCAATATTATAATCCGCG 3091 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 |||||||| |||||||||||| | |||||||| |||| |||| |||||| |||| Sbjct 3090 AGTGTTCGGTCGTCTTCAAGTGCTACTCCGGCAAAAATTAGGTGCTGCTGGTCCAGCGGA 3031 Query 34600 ACTCCCTCCTTGTCT 34614 | ||| || |||||| Sbjct 3030 ATTCCTTCTTTGTCT 3016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314704118999819