Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 113 3e-20
seq4581 104 1e-17
seq4218 91.5 9e-14
>seq4212
Length=20478
Score = 113 bits (124), Expect = 3e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| || || | ||||| ||||||||||| || || || || |||||
Sbjct 2367 CCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGAC 2308
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || ||||| || || |||||||| || | |||||| || ||||||||
Sbjct 2307 AGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 2248
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||| ||| || | || || | || |||||| ||||||
Sbjct 2247 ATACCCTCCTTGTC-CTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCAC 2189
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||| || || |||||||| || | || || || ||||||||||||
Sbjct 2188 CTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 2140
Score = 109 bits (120), Expect = 3e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
|||||| | |||||| | || | || |||||| |||||| |||||||| || || ||
Sbjct 2140 GCCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 2081
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| || || ||||||| || || || ||||| || || | ||||| ||||| || ||
Sbjct 2080 AAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 2021
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| |||| || | || ||| | || ||||| |||||
Sbjct 2020 AATGCCCTCCTTGTCTTGGATC-TTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCA 1962
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| || ||||| || || || | || || || || ||||||||
Sbjct 1961 CTTCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913
>seq4581
Length=31643
Score = 104 bits (114), Expect = 1e-17
Identities = 115/152 (76%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| || | ||| |||||||||| || || || | | ||| ||||| || |
Sbjct 30933 CCTCCTCTCAGTCTCAAGACCAAATGGATGGTACTTTCATATGCAATATTATATTCCGCG 30992
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|||||||| ||||||| ||||| |||||||| |||| ||||| |||||||||||
Sbjct 30993 AGTGTTCGGTCGTCTTGAAGTTCCCCTCCGGCAAAGATTAGGCGCTGCTGGTCCGGCGGA 31052
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAA 34631
| ||| || |||||| ||| | || |||||||
Sbjct 31053 ATTCCTTCTTTGTCT-TGAACCTTGGTTTTAA 31083
>seq4218
Length=3162
Score = 91.5 bits (100), Expect = 9e-14
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| || ||| |||||||||| || |||||| ||| |||||||| |
Sbjct 3150 CCCCCTCTCAGTTTCAAGACCAAATGGATGGTATCATCCTTTGCAATATTATAATCCGCG 3091
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|||||||| |||||||||||| | |||||||| |||| |||| |||||| ||||
Sbjct 3090 AGTGTTCGGTCGTCTTCAAGTGCTACTCCGGCAAAAATTAGGTGCTGCTGGTCCAGCGGA 3031
Query 34600 ACTCCCTCCTTGTCT 34614
| ||| || ||||||
Sbjct 3030 ATTCCTTCTTTGTCT 3016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314704118999819
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |