Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4212 203 8e-47 seq4824 149 1e-30 seq1236 132 1e-25 seq6278 96.9 8e-15 seq6241 89.7 1e-12 seq4581 86.0 1e-11 >seq4212 Length=20478 Score = 203 bits (224), Expect = 8e-47 Identities = 178/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || |||||||| || |||||||| |||||||||||||| | || || Sbjct 1906 ACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGT 1847 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| |||||||| ||||| |||||||||||||||| || Sbjct 1846 ACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACC 1787 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || |||||||||||||| || ||||| || Sbjct 1786 CTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCACCTCCAG 1727 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || |||||||| ||||| ||||| | |||||| Sbjct 1726 CGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1685 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| ||||||||||| || || ||||| || || | ||| || Sbjct 2134 ACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGT 2075 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| ||||||||||| |||||||| ||||| || ||||| ||||||| || Sbjct 2074 ACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCC 2015 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| |||||||| || ||||||||||| || || || | Sbjct 2014 CTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAA 1955 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| |||||||| ||||| || || | |||||| Sbjct 1954 TGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||||||| || ||| ||| || ||||| || || || | || || Sbjct 2362 ACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGT 2303 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || || ||||| || || || || || || || | || Sbjct 2302 GCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACC 2243 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || || || ||||||||||| || || ||||| | Sbjct 2242 CTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCCAA 2183 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| ||||| || || | |||||| Sbjct 2182 CGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| |||||||| || ||||| |||||||| |||||| ||||||||| Sbjct 1508 CCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCAGAGGACTCAACCTCG 1449 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || ||||| ||||| ||||| | |||||| Sbjct 1448 AGGGTGATGGTTTTGCCGGTGAGTGTCTTGACAAAAATCTGCAT 1405 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | |||||| || ||||| ||||||||||| ||||| | || |||| ||||| || Sbjct 1666 GACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCGGAGAGTGTCCGACCATCCTC 1607 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || |||||||| |||||||| || || || ||||| || |||| Sbjct 1606 AAGTTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGTGGAA 1563 >seq4824 Length=32535 Score = 149 bits (164), Expect = 1e-30 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| |||||||| |||||||| || || ||||||||||| | || || Sbjct 152 ACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAGAGCGT 93 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| ||||||||||||||||| ||||| |||||||| | || Sbjct 92 ACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCC 33 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 |||||||||||| ||||| |||||||| Sbjct 32 TTCCTTGTCCTGAATCTTCGCCTTCACGTT 3 >seq1236 Length=761 Score = 132 bits (146), Expect = 1e-25 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| |||||| || || ||||| |||||||||||||| ||||||| || ||| Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || |||||||||||| || || || ||||| ||||| || || ||||| | ||| Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || ||||| | |||||| Sbjct 123 ATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160 Score = 104 bits (114), Expect = 5e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||||||||| || ||||| || |||||||| ||||| | || || | ||||| || Sbjct 179 GACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGACCATCCTC 238 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||| |||||||| ||||| |||||||| || || Sbjct 239 CAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGGTGG 280 >seq6278 Length=62549 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || ||||| | ||||| Sbjct 46618 AGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 46677 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || || ||||| || |||||||| ||||| ||||||||||| |||| Sbjct 46678 TCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAA 46723 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||| || || ||||| |||||||||||||| || |||||| Sbjct 46789 CCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCG 46848 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| || ||||| ||||| || || | |||||| || Sbjct 46849 AGGGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 46895 >seq6241 Length=43505 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||||||||| || ||||||||||| || || ||| || | ||||| Sbjct 25920 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTACGGCCATCC 25861 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || |||||||| ||||||||||| || || || ||||| || || Sbjct 25860 TCGAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGG 25817 >seq4581 Length=31643 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 210933 ATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGT 210992 || ||||| ||||| || || | | |||| || | | || || ||||| ||||| Sbjct 30978 ATATTATATTCCGCGAGTGTTCGGTCGTCTTGAAGTTCCCCTCCGGCAAAGATTAGGCGC 31037 Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || ||||| || |||| |||||| ||||| || | ||| ||| | | | | ||||| Sbjct 31038 TGCTGGTCCGGCGGAATTCCTTCTTTGTCTTGAACCTTGGTTTTAAGGCTGTATATGGTA 31097 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 | || | |||| |||||| |||||||||||||| ||||| ||||| |||||| Sbjct 31098 TGGGAAGCGTGTGTGTCGATAGTGATTGTCTTTCCCGTGAGTGTCTTAACAAAAACCTGC 31157 Query 211113 AT 211114 || Sbjct 31158 AT 31159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159053340588695