Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 95.1 1e-14
>seq4212
Length=20478
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
||||| ||| ||| || || || || || |||| ||| || || |||| || |||||
Sbjct 2115 TGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCGAGCTGC 2056
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||| || || || || ||||||||||||| || | || ||| ||||| ||| |||
Sbjct 2055 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTC 1996
Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
|| | ||| | | | || || ||||||||| |||| ||||| | || |||||
Sbjct 1995 GCCTTCA-CGTTGTCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTCCCCGT 1937
Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || ||||| |||||
Sbjct 1936 GAGGGTCTTGACGAAGATCTGCAT 1913
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
||||| || | || || |||||||| || || ||||| || || | || || || |
Sbjct 2355 CGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCA 2296
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| |||||||| || || ||||| || ||||||||||| || | || | | ||| |||
Sbjct 2295 TCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTG 2236
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
||| || ||| |||| | | | || || |||||||| |||| ||| ||
Sbjct 2235 TCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCCAACGTAATG 2176
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| ||||| || || || || || || |||||
Sbjct 2175 GTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429510823317059
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |