Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4212 158 3e-33 seq1236 118 3e-21 seq4824 104 6e-17 seq6278 89.7 1e-12 seq6241 86.0 1e-11 >seq4212 Length=20478 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||| |||||||| || || || | ||||| |||| | ||| Sbjct 2134 ACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGT 2075 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| || |||||||| || || || |||||||| ||||| || Sbjct 2074 ACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCC 2015 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| |||||| || |||||||| || | ||||| || || Sbjct 2014 CTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAA 1955 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| ||||| | || || | ||| | ||||| Sbjct 1954 TGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 154 bits (170), Expect = 4e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || ||||| |||| || ||||||| || || Sbjct 1906 ACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGT 1847 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || |||||||| || |||||||| Sbjct 1846 ACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACC 1787 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 1786 CTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCACCTCCAG 1727 Query 225672 CGTGATCGTCTTGCCCGT 225689 |||||| || |||||||| Sbjct 1726 CGTGATGGTTTTGCCCGT 1709 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | |||||||||||| ||| || || |||| |||||| || | || || Sbjct 2362 ACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGT 2303 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| || || || || || ||||| ||||| Sbjct 2302 GCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACC 2243 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| ||| |||||||||||||| | ||||| || || Sbjct 2242 CTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCCAA 2183 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || ||||| | || || | ||| | ||||| Sbjct 2182 CGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141 >seq1236 Length=761 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | |||||| ||||| ||||| || ||||||||||| || |||||||| ||| Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || ||||||||| ||| ||| ||||| ||||| || | || || || |||||| Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || || || ||||| | ||||| Sbjct 123 ATGGTTTTACCCGTGAGGGTTTT 145 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||||||||| || || || || || |||| |||||||||| | || Sbjct 167 ACGGAGACGCAAGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGCGT 226 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATAC 225610 | ||||| || |||||||| ||||||||||| || || ||||||||||| || |||| Sbjct 227 GCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGGTGGGATAC 285 >seq4824 Length=32535 Score = 104 bits (114), Expect = 6e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||| || ||||| || || || | || ||||| | | || Sbjct 152 ACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGAGAGCGT 93 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||||||| ||||||||||| || ||||| || || || || || Sbjct 92 ACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGGGATGCC 33 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||||||| || ||||| |||||| Sbjct 32 TTCCTTGTCCTGAATCTTCGCCTTCAC 6 >seq6278 Length=62549 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| ||||| || || |||| ||||| ||| | || | ||||| Sbjct 46618 AGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 46677 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATAC 225610 || || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct 46678 TCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATAC 46726 >seq6241 Length=43505 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||||||||| ||||||| ||||| ||| | ||| | ||||| Sbjct 25920 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTACGGCCATCC 25861 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || |||||||| || |||||||| || || || |||||||| || || Sbjct 25860 TCGAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGGGAT 25814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192429699570242