Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2220 210 3e-49 >seq2220 Length=173857 Score = 210 bits (232), Expect = 3e-49 Identities = 369/536 (69%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 || || || | ||| || | |||||| || || | ||| || ||||| | |||||| ||| Sbjct 65253 CCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCCACGCTTT 65194 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 |||||||| ||||| | |||||||| || |||||||| ||||| || || || ||||| Sbjct 65193 TTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGCAGCAAAA 65134 Query 48282 GCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCA 48338 || |||| || | |||| | |||| |||||| ||| ||||| || Sbjct 65133 GCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGATATCCATCGTAACGCCCAGTCT 65074 Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTG 48398 ||||| ||| || || || | ||||| |||| || ||||| | |||||| Sbjct 65073 GCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCGCTCATTG 65014 Query 48399 CTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATT 48458 ||| || | | || || || | || ||| | ||||| || || || || || Sbjct 65013 ACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCGATC 64954 Query 48459 GCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGT 48518 || || || |||||||| |||| ||||||| ||||| ||||| | |||| || Sbjct 64953 ATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGC 64894 Query 48519 TCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTA 48578 ||| ||| ||||||||| ||||| || || ||||| || || ||||| |||||| Sbjct 64893 TCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAACATGTGAG 64834 Query 48579 ATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATA 48635 || |||| ||| || ||||| | | |||||||||| | || || | || | | Sbjct 64833 ATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGTGGAGAGA 64774 Query 48636 TCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || | |||||| || |||||||| || ||||| |||||||| ||||| ||||| || Sbjct 64773 TCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718 Score = 132 bits (146), Expect = 7e-26 Identities = 371/564 (66%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || ||||| || || | ||| ||||| | || || | ||||| || || ||| Sbjct 62998 AAGCAAGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATGAGCTCGTTGGAGAAAGTG 63057 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 ||||| ||||| || || ||||| |||||||| || || | || || || ||||| ||| Sbjct 63058 AGACCAGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCAGAGAAG 63117 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG--CTTCGTTGT 48315 || || || || ||||| || ||||| | || || | | ||| | | | | Sbjct 63118 AAGATACCCTCGACGGCAGCGAATGCTACCAATCGTTCAGCAAAGGTGGAACGTTGATCA 63177 Query 48316 GT-ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 || |||||| ||||||| || ||||| ||| || || || || || || || ||| Sbjct 63178 GTTATCCACTTCAGTGCCCAGTCGGCCTTGCGCTTAACGCAGGGAATGGTCTCCATGGCA 63237 Query 48375 TTAAAGAGAAAGtttttttCATTG-CT---ATCTTTAACGTAAGTATCTATTAAAAGACT 48430 | || ||| | || | ||| || ||| || | || || || || | || Sbjct 63238 TCGAA----AAGGTATTCGCGTTGTCTGGGATCCTTGATATAGGTGTCGATGAGGAGTGA 63293 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 || | || ||||||||||| || || || || || ||||| || || | ||||| Sbjct 63294 GTAGGTCTCAGAGTGAATATTCTCCATCATAATTTGGAAACCGTAGAAGCACCGGGCTTC 63353 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | | ||| ||||| | | || || ||| | | || ||||| || || ||||| Sbjct 63354 GGCGGCCTGAACCTCATTGGAGAAACGCTCAACGAGGTTTTCATTGACGATGCCATCGGA 63413 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTT 48607 ||||| || || || | ||||||| || || | |||||| | | | | || Sbjct 63414 TGCAGCGAAGAAGGCGAGTACATGTGATATGAAGTGGCGCTCGTTGTCATTGAGACGGTT 63473 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 ||||||||| | |||||||| | ||| | || ||||| ||||| || |||||||| Sbjct 63474 GGTCCAGTCATGAACGTCTTTTGAGAGATCCATCTCCTCAGCAGTCCAGAAGGATGCCTC 63533 Query 48668 TGCTTTTTTATACATATTCCATAT 48691 || || || ||||| | |||||| Sbjct 63534 GGCCTTCTTGTACATTTGCCATAT 63557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694611116439520