Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2220 197 2e-45 seq4642 91.5 2e-13 >seq2220 Length=173857 Score = 197 bits (218), Expect = 2e-45 Identities = 366/536 (68%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710 || || || | ||| || | |||||| || || | ||| || ||||| | |||||||||| Sbjct 65253 CCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCCACGCTTT 65194 Query 46711 TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770 |||||||| ||||||| |||||||| || |||||||| ||||| || ||||| || || Sbjct 65193 TTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGCAGCAAAA 65134 Query 46771 GCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCA 46827 || || |||| || | |||||| || | | ||||| | | ||||| || Sbjct 65133 GCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGATATCCATCGTAACGCCCAGTCT 65074 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCA 46887 ||||| ||| || || || | ||||| |||| || ||||| | |||| Sbjct 65073 GCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCGCTCATTG 65014 Query 46888 CTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATA 46947 ||| || | || || || | || ||| | || ||||| ||||| || || Sbjct 65013 ACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCGATC 64954 Query 46948 GCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGT 47007 || || || |||||||| |||| ||||| | |||||| ||||| | |||| || Sbjct 64953 ATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGC 64894 Query 47008 TCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTA 47067 ||| || ||||||||| ||||| || || ||||| || || || || |||||| Sbjct 64893 TCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAACATGTGAG 64834 Query 47068 ATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATA 47124 || |||| ||||| | ||| | | |||||||||| | || || | || | | Sbjct 64833 ATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGTGGAGAGA 64774 Query 47125 TCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || | |||||| || ||||| || || ||||| |||||||| ||||| ||||| || Sbjct 64773 TCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718 >seq4642 Length=14046 Score = 91.5 bits (100), Expect = 2e-13 Identities = 179/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 ||| ||||| ||||| | || ||| | ||||| | || | |||||||||||| || Sbjct 10196 GCCAATTCCACCTGCGGTCTTGCTGATCATGGCACAACTCTTGAGTGTGTCATAGATACC 10255 Query 76936 CTCTATACTATCATCCATCATGTTAAG-AAGAA--AACAGCTAGACATTTGATGATGAAC 76992 |||||| ||||| |||| || ||||| | |||| | ||| ||||| Sbjct 10256 CTCTATGGAGTCATCTTTCATACAAACCAAGAAGCATGAGCTT---AGTTGCGGATGAGG 10312 Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || |||||||| | || || || || || ||||| | |||||| | || || Sbjct 10313 AGTGCCAGCATTAAATAGAGTTGGCGACGCGTGCGTGAAGTAACGTTCAGACATAAGGTT 10372 Query 77053 GTATGTTTCAATAACTGCT-TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| || ||||| || ||| || |||||| | || || || || ||||||||||| | Sbjct 10373 GTACGTCTCAATGAC-GCTGTCGATATCCTGCTTGTGGATGCCCACTGCGACACGCATGA 10431 Query 77112 ACATATGCTGAGGTCGTTC 77130 ||| || ||||| ||||| Sbjct 10432 TCATGTGTTGAGGACGTTC 10450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712875199709760