Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2220 197 2e-45
seq4642 91.5 2e-13
>seq2220
Length=173857
Score = 197 bits (218), Expect = 2e-45
Identities = 366/536 (68%), Gaps = 6/536 (1%)
Strand=Plus/Minus
Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710
|| || || | ||| || | |||||| || || | ||| || ||||| | ||||||||||
Sbjct 65253 CCCTCGTCACGACTGATGAGTTCGTTTGAGAAAGCGAGGCCTGGCATCAATCCACGCTTT 65194
Query 46711 TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770
|||||||| ||||||| |||||||| || |||||||| ||||| || ||||| || ||
Sbjct 65193 TTGAGCCAGAATATAGATGCGAAAGAACCGGAAAAGAAGATGCCCTCAACAGCAGCAAAA 65134
Query 46771 GCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCA 46827
|| || |||| || | |||||| || | | ||||| | | ||||| ||
Sbjct 65133 GCAACTAGTCGGGTAGCGAATGTGGCATGTTTGTCAGATATCCATCGTAACGCCCAGTCT 65074
Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCA 46887
||||| ||| || || || | ||||| |||| || ||||| | ||||
Sbjct 65073 GCCTTGCGCTTAACGGCGGGTATGGACTCTATTGCATCGAAAAGAAACTGCCGCTCATTG 65014
Query 46888 CTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATA 46947
||| || | || || || | || ||| | || ||||| ||||| || ||
Sbjct 65013 ACATCCTTGATGAGGGTGTCGATAAGGAGTGAATAGGTCTCGGAATGGATGTTCTCGATC 64954
Query 46948 GCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGT 47007
|| || || |||||||| |||| ||||| | |||||| ||||| | |||| ||
Sbjct 64953 ATGATTTGGAACCCGTAAAAGCATCGAGCTTCTGCAATCTGAACCTCGTTCGAAAACCGC 64894
Query 47008 TCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTA 47067
||| || ||||||||| ||||| || || ||||| || || || || ||||||
Sbjct 64893 TCAACCAGATTCTCATTGACTATGCCGTCGGATGCAGCGAAGAAAGCTAAAACATGTGAG 64834
Query 47068 ATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATA 47124
|| |||| ||||| | ||| | | |||||||||| | || || | || | |
Sbjct 64833 ATGAAATGACGTTCATTTGAAGTTAGGCGGGTATTCCAGTCGATAATGTCAGTGGAGAGA 64774
Query 47125 TCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180
|| | |||||| || ||||| || || ||||| |||||||| ||||| ||||| ||
Sbjct 64773 TCCATTTCTTCGGCGGTCCAAAAAGAAGCCTCGGCTTTTTTGTACATGTTCCAAAT 64718
>seq4642
Length=14046
Score = 91.5 bits (100), Expect = 2e-13
Identities = 179/259 (69%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935
||| ||||| ||||| | || ||| | ||||| | || | |||||||||||| ||
Sbjct 10196 GCCAATTCCACCTGCGGTCTTGCTGATCATGGCACAACTCTTGAGTGTGTCATAGATACC 10255
Query 76936 CTCTATACTATCATCCATCATGTTAAG-AAGAA--AACAGCTAGACATTTGATGATGAAC 76992
|||||| ||||| |||| || ||||| | |||| | ||| |||||
Sbjct 10256 CTCTATGGAGTCATCTTTCATACAAACCAAGAAGCATGAGCTT---AGTTGCGGATGAGG 10312
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
||| || |||||||| | || || || || || ||||| | |||||| | || ||
Sbjct 10313 AGTGCCAGCATTAAATAGAGTTGGCGACGCGTGCGTGAAGTAACGTTCAGACATAAGGTT 10372
Query 77053 GTATGTTTCAATAACTGCT-TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCA 77111
||| || ||||| || ||| || |||||| | || || || || ||||||||||| |
Sbjct 10373 GTACGTCTCAATGAC-GCTGTCGATATCCTGCTTGTGGATGCCCACTGCGACACGCATGA 10431
Query 77112 ACATATGCTGAGGTCGTTC 77130
||| || ||||| |||||
Sbjct 10432 TCATGTGTTGAGGACGTTC 10450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712875199709760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |