Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4212 158 3e-33 seq2220 113 9e-20 seq1236 109 1e-18 seq6241 93.3 9e-14 >seq4212 Length=20478 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | || || || | ||||| || || ||||| |||||||| | Sbjct 2367 CCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGAC 2308 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| |||||||| || || || ||||||||||||| ||| || || || ||| Sbjct 2307 AGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 2248 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| || ||||| || || || | ||||| ||||| || | || || Sbjct 2247 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACC 2188 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || || |||||||| | ||||| ||||| |||||||| Sbjct 2187 TCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || |||| ||| || || || ||||||||||| | | Sbjct 2139 CCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAA 2080 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || || || || ||||| ||||| | || || ||||| ||| Sbjct 2079 AGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGA 2020 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| || || ||| | || || ||||| || | || ||| Sbjct 2019 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACT 1960 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 1959 TCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || || || | || ||||| |||||||| || || | Sbjct 1912 ACCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGA 1853 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| || |||||||| || || || || || ||||| | || ||||||||| || Sbjct 1852 CAGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGG 1793 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| || ||||| | ||||| ||||| || | || || Sbjct 1792 AATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCAC 1733 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || ||||| | ||||| || || |||||||| Sbjct 1732 CTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1685 >seq2220 Length=173857 Score = 113 bits (124), Expect = 9e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 230197 TCATTTGC-GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAA 230255 || ||||| || ||| |||| ||| | || || |||||||| || | |||||| | || Sbjct 62865 TCTTTTGCAGATGCTCTTCCCTGCGGCCTCATTGGCATGAACGCCAAGCTCATGCGCCAG 62806 Query 230256 TATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAAC 230315 || ||||| || || || || || | | ||| |||| || ||||||| ||||| ||| Sbjct 62805 TACATCGAGTTTGTCGCAGACCGCTTACTAGTGTCGCTGGGTAACGAGAAGGTGTACAAC 62746 Query 230316 TCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTC 230375 || | || ||||||| || ||||| | || || || || || || || ||||||||| Sbjct 62745 TCTACCAATCCCTTCGACTTCATGGACATGATCTCGCTACAAGGCAAGACGAACTTCTTC 62686 Query 230376 GAAAAGCGTGTCAGCGATTA-TCAAAGGC 230403 || |||||||| ||||| || ||||| Sbjct 62685 GAGAAGCGTGTATCAGATTATTCGAAGGC 62657 >seq1236 Length=761 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || | || || || |||||||| | ||||||||||| |||||||||||| Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || || ||||||||||| || || | ||||||||||| || | || || || | ||| Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||| | || || || || |||||||| Sbjct 123 ATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 |||||||||||||| ||||| || || ||| ||||||| ||||| || | ||||| || Sbjct 338 CCCTCCTTGTCTTGAATCTTGGCCTTAACGTTATCGATGGTGTCAGAGGACTCGACCTCT 397 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| || || | ||||||||||| ||||||||| Sbjct 398 AATGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATCTGCATT 442 >seq6241 Length=43505 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| ||| ||||||||||||||||| Sbjct 25936 ACCACCACGGAGGCGGAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGCT 25877 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||| || ||||||||||| || || || || || ||||||| ||| || ||||| Sbjct 25876 AAGAGTACGGCCATCCTCGAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTC 25823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046650108428522