Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 158 3e-33
seq2220 113 9e-20
seq1236 109 1e-18
seq6241 93.3 9e-14
>seq4212
Length=20478
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || | || || || | ||||| || || ||||| |||||||| |
Sbjct 2367 CCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGAC 2308
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|||||||| |||||||| || || || ||||||||||||| ||| || || || |||
Sbjct 2307 AGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 2248
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||||||||||| || ||||| || || || | ||||| ||||| || | || ||
Sbjct 2247 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCACC 2188
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || || |||||||| | ||||| ||||| ||||||||
Sbjct 2187 TCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 2141
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| || || |||| ||| || || || ||||||||||| | |
Sbjct 2139 CCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAA 2080
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || || || || || || || ||||| ||||| | || || ||||| |||
Sbjct 2079 AGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGA 2020
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||||||||| || || ||| | || || ||||| || | || |||
Sbjct 2019 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACT 1960
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||||||||| ||||| | ||||| ||||| ||||||||
Sbjct 1959 TCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| || || || | || ||||| |||||||| || || |
Sbjct 1912 ACCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGA 1853
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||| || |||||||| || || || || || ||||| | || ||||||||| ||
Sbjct 1852 CAGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGG 1793
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| |||||||| || ||||| | ||||| ||||| || | || ||
Sbjct 1792 AATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCAGACGACTCCAC 1733
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| || || ||||| | ||||| || || ||||||||
Sbjct 1732 CTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1685
>seq2220
Length=173857
Score = 113 bits (124), Expect = 9e-20
Identities = 152/209 (73%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 230197 TCATTTGC-GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAA 230255
|| ||||| || ||| |||| ||| | || || |||||||| || | |||||| | ||
Sbjct 62865 TCTTTTGCAGATGCTCTTCCCTGCGGCCTCATTGGCATGAACGCCAAGCTCATGCGCCAG 62806
Query 230256 TATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAAC 230315
|| ||||| || || || || || | | ||| |||| || ||||||| ||||| |||
Sbjct 62805 TACATCGAGTTTGTCGCAGACCGCTTACTAGTGTCGCTGGGTAACGAGAAGGTGTACAAC 62746
Query 230316 TCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTC 230375
|| | || ||||||| || ||||| | || || || || || || || |||||||||
Sbjct 62745 TCTACCAATCCCTTCGACTTCATGGACATGATCTCGCTACAAGGCAAGACGAACTTCTTC 62686
Query 230376 GAAAAGCGTGTCAGCGATTA-TCAAAGGC 230403
|| |||||||| ||||| || |||||
Sbjct 62685 GAGAAGCGTGTATCAGATTATTCGAAGGC 62657
>seq1236
Length=761
Score = 109 bits (120), Expect = 1e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001
||||| || | || || || |||||||| | ||||||||||| ||||||||||||
Sbjct 3 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCC 62
Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061
|| || ||||||||||| || || | ||||||||||| || | || || || | |||
Sbjct 63 TTATCCTGGATCTTTGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTG 122
Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || |||||||| | || || || || ||||||||
Sbjct 123 ATGGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCAT 160
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055
|||||||||||||| ||||| || || ||| ||||||| ||||| || | ||||| ||
Sbjct 338 CCCTCCTTGTCTTGAATCTTGGCCTTAACGTTATCGATGGTGTCAGAGGACTCGACCTCT 397
Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
| ||||| ||||| || || | ||||||||||| |||||||||
Sbjct 398 AATGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATCTGCATT 442
>seq6241
Length=43505
Score = 93.3 bits (102), Expect = 9e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | ||| ||| |||||||||||||||||
Sbjct 25936 ACCACCACGGAGGCGGAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGCT 25877
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985
||| || ||||||||||| || || || || || ||||||| ||| || |||||
Sbjct 25876 AAGAGTACGGCCATCCTCGAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTC 25823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046650108428522
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |