Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4212 161 7e-35 seq1236 91.5 1e-13 >seq4212 Length=20478 Score = 161 bits (178), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || || ||||| || ||||||||||| ||||| ||||| || | || ||| | || Sbjct 2352 AAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCC 2293 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || |||||||| ||||||||||||| |||||||||||| | || | ||| ||||| ||| Sbjct 2292 TCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC 2233 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 |||||| ||| || ||| | |||||||| | || |||||||||| |||||| | Sbjct 2232 TGAATCTTCGCCTTGACATTGT--CGATGGTGTCTGATGACTCCACCTCCAACGTAATGG 2175 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || |||||||||||||| ||||| || |||||| Sbjct 2174 TTTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 2140 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| || |||||||| |||| || || |||| || Sbjct 2121 ACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCG 2062 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||||| || | ||| | || ||||| || Sbjct 2061 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGG 2002 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | |||||||||| | || ||||| |||| || |||||||| Sbjct 2001 ATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTC 1942 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| |||||||| ||||| Sbjct 1941 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 125 bits (138), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||| || |||||||| ||||||| || || | || || Sbjct 1893 ACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGTACGACCATCCTCA 1834 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||| || || | ||| | ||| ||||| ||| Sbjct 1833 AGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGG 1774 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||| | || |||||||||| ||| || || | Sbjct 1773 ATCTTCGCCTTTACATTGT--CGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTT 1716 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | |||||||||||||| || ||||| |||||| Sbjct 1715 TGCCCGTGAGGGTCTTGACAAAGATCTGCATG 1684 >seq1236 Length=761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| |||||| || |||||||| | || || || || | ||| | ||| ||||| Sbjct 6 TCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTA 65 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| ||| | || || | || ||||||| || || ||||||| ||| || Sbjct 66 TCCTGGATCTT-TGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTGAT 124 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||||||||| || || ||||| |||||| Sbjct 125 GGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCATG 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359961254614731