Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 161 7e-35
seq1236 91.5 1e-13
>seq4212
Length=20478
Score = 161 bits (178), Expect = 7e-35
Identities = 166/215 (77%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185
|| || ||||| || ||||||||||| ||||| ||||| || | || ||| | ||
Sbjct 2352 AAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGACAGCGTGCGACCATCC 2293
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|| |||||||| ||||||||||||| |||||||||||| | || | ||| ||||| |||
Sbjct 2292 TCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC 2233
Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303
|||||| ||| || ||| | |||||||| | || |||||||||| |||||| |
Sbjct 2232 TGAATCTTCGCCTTGACATTGT--CGATGGTGTCTGATGACTCCACCTCCAACGTAATGG 2175
Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| || |||||||||||||| ||||| || ||||||
Sbjct 2174 TTTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 2140
Score = 138 bits (152), Expect = 8e-28
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || ||| |||||| || |||||||| |||| || || |||| ||
Sbjct 2121 ACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGACCGTCTTCG 2062
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| ||||| | |||||||| || | ||| | || ||||| ||
Sbjct 2061 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGG 2002
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||||| | |||||||||| | || ||||| |||| || ||||||||
Sbjct 2001 ATCTTCGCCTTCACGTTGTCTATGGTGTCAGACGACTCCACTTCCAATGTGATCGTCTTC 1942
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||||||||| |||||||| |||||
Sbjct 1941 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1913
Score = 125 bits (138), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || ||| || |||||||| ||||||| || || | || ||
Sbjct 1893 ACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGACAGCGTACGACCATCCTCA 1834
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||| | ||||| || || | ||| | ||| ||||| |||
Sbjct 1833 AGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGG 1774
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | |||||||| | || |||||||||| ||| || || |
Sbjct 1773 ATCTTCGCCTTTACATTGT--CGATGGTGTCAGACGACTCCACCTCCAGCGTGATGGTTT 1716
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| |||||||||||||| || ||||| ||||||
Sbjct 1715 TGCCCGTGAGGGTCTTGACAAAGATCTGCATG 1684
>seq1236
Length=761
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| |||| |||||| || |||||||| | || || || || | ||| | ||| |||||
Sbjct 6 TCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTA 65
Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301
||| ||||| ||| | || || | || ||||||| || || ||||||| ||| ||
Sbjct 66 TCCTGGATCTT-TGCCTTAACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTGAT 124
Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || ||||||||||| || || ||||| ||||||
Sbjct 125 GGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCATG 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359961254614731
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |