Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11-
18] 6,643 sequences; 43,780,879 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 140 8e-28
seq1236 109 1e-18
seq4824 95.1 3e-14
seq6278 84.2 5e-11
>seq4212
Length=20478
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || ||||| || ||||| ||||| || |||||||| || |||
Sbjct 1688 CAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCTGAC 1747
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| |||||||| || || || ||||| ||||| ||
Sbjct 1748 ACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAACAG 1807
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||||| || ||||| | || || ||||||||||| ||
Sbjct 1808 CGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAACATC 1867
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| ||||| || || || || || |||
Sbjct 1868 CAGAAAGAGTCTACCCTTCACCTCGTT 1894
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || ||||| || || | |||||||| ||||||
Sbjct 2144 CAGATTTTCGTCAAGACCCTCACGGGTAAAACCATTACGTTGGAGGTGGAGTCATCAGAC 2203
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| |||||||||||||| || || ||||| ||||| |||||
Sbjct 2204 ACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 2263
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| |||||||| ||||| || ||||| | || || | || || || ||
Sbjct 2264 CGTCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACGCTGTCAGACTACAATATC 2323
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132
|| || || ||||| || ||||| ||
Sbjct 2324 CAGAAGGAGAGCACACTCCACCTTGTCTT 2352
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || |||||||| | || ||||| || |||
Sbjct 1916 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCTGAC 1975
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||| || ||||| || || || ||||| ||||||||
Sbjct 1976 ACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAG 2035
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||||||||| || | |||||| |||| || ||| |
Sbjct 2036 CGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAACATT 2095
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 2096 CAGAAGGAGTCCACTCTACACCTCGT 2121
>seq1236
Length=761
Score = 109 bits (120), Expect = 1e-18
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || ||||| ||||| || ||||| ||||| | ||||| || || |||
Sbjct 157 CAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCCGAC 98
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || |||||| ||||| || || || || ||||||||||| |||
Sbjct 97 ACTATCGACAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAACAA 38
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
|| || ||||| || ||||| ||| | ||||||||
Sbjct 37 CGCCTCATCTTTGCTGGAAAGCAGTTGGAAGATGG 3
>seq4824
Length=32535
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| ||||| |||||||| || || || || ||||||||||| || ||
Sbjct 15 AAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAACAGCGCCTTATCTTCGCAGGGAAG 74
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||| | |||||||| | || || | ||||||||| | || || || || || || ||
Sbjct 75 CAGTTGGAAGATGGTCGTACGCTCTCAGATTATAACATTCAGAAGGAGTCCACCCTTCAC 134
Query 178125 CTTGT 178129
|| ||
Sbjct 135 CTCGT 139
>seq6278
Length=62549
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||||||||||||||| || |||
Sbjct 46889 CAGATCTTCGTCAAGACCCTCACCGGGAAGACCATCACCCTCGAGGTGGAGTCTTCTGAC 46830
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||| |||||||| || || |||||||| |||||
Sbjct 46829 ACCATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGG 46789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203628746299742
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |