Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4212 140 8e-28 seq1236 109 1e-18 seq4824 95.1 3e-14 seq6278 84.2 5e-11 >seq4212 Length=20478 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || ||||| ||||| || |||||||| || ||| Sbjct 1688 CAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACGCTGGAGGTGGAGTCGTCTGAC 1747 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || ||||| ||||| || Sbjct 1748 ACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAACAG 1807 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | || || ||||||||||| || Sbjct 1808 CGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACGCTGTCCGATTATAACATC 1867 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| || || || || || ||| Sbjct 1868 CAGAAAGAGTCTACCCTTCACCTCGTT 1894 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || ||||| || || | |||||||| |||||| Sbjct 2144 CAGATTTTCGTCAAGACCCTCACGGGTAAAACCATTACGTTGGAGGTGGAGTCATCAGAC 2203 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || ||||| ||||| ||||| Sbjct 2204 ACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAGCAG 2263 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||||| || ||||| | || || | || || || || Sbjct 2264 CGTCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACGCTGTCAGACTACAATATC 2323 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 || || || ||||| || ||||| || Sbjct 2324 CAGAAGGAGAGCACACTCCACCTTGTCTT 2352 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||| | || ||||| || ||| Sbjct 1916 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACATTGGAAGTGGAGTCGTCTGAC 1975 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| || ||||| || || || ||||| |||||||| Sbjct 1976 ACCATAGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAG 2035 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||||||||| || | |||||| |||| || ||| | Sbjct 2036 CGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTTTCCGACTACAACATT 2095 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 2096 CAGAAGGAGTCCACTCTACACCTCGT 2121 >seq1236 Length=761 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || ||||| ||||| | ||||| || || ||| Sbjct 157 CAGATCTTTGTCAAAACCCTCACGGGTAAAACCATCACGTTGGAGGTAGAGTCATCCGAC 98 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||| ||||| || || || || ||||||||||| ||| Sbjct 97 ACTATCGACAATGTTAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAACAA 38 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || ||||| || ||||| ||| | |||||||| Sbjct 37 CGCCTCATCTTTGCTGGAAAGCAGTTGGAAGATGG 3 >seq4824 Length=32535 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| ||||| |||||||| || || || || ||||||||||| || || Sbjct 15 AAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAACAGCGCCTTATCTTCGCAGGGAAG 74 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | |||||||| | || || | ||||||||| | || || || || || || || Sbjct 75 CAGTTGGAAGATGGTCGTACGCTCTCAGATTATAACATTCAGAAGGAGTCCACCCTTCAC 134 Query 178125 CTTGT 178129 || || Sbjct 135 CTCGT 139 >seq6278 Length=62549 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||||||||||||||| || ||| Sbjct 46889 CAGATCTTCGTCAAGACCCTCACCGGGAAGACCATCACCCTCGAGGTGGAGTCTTCTGAC 46830 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| || || |||||||| ||||| Sbjct 46829 ACCATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGG 46789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203628746299742