Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4212 167 2e-36 seq1236 98.7 9e-16 seq6278 96.9 3e-15 seq4824 93.3 4e-14 >seq4212 Length=20478 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || ||| ||||||||||||||| |||||||| Sbjct 2140 GCCGCCACGAAGACGAAGGACGAGGTGTAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 2081 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| |||||||||||||||||||| || |||||||| ||||| | || Sbjct 2080 AAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 2021 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||| || |||| ||| | | | ||||| |||||||| Sbjct 2020 AATGCCCTCCTTGTCTTGGATCTTCGCCTTC-ACGTTGTCTATGGTGTCAGACGACTCCA 1962 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 1961 CTTCCAATGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 1913 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || |||||||| || || || || |||||||||||||| || || ||||| || Sbjct 2367 CCACCACGAAGACGTAAGACAAGGTGGAGTGTGCTCTCCTTCTGGATATTGTAGTCTGAC 2308 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| ||||| || ||||| ||||| || |||| || Sbjct 2307 AGCGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 2248 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | || | | | ||||| |||||||| Sbjct 2247 ATACCCTCCTTGTCC-TGAATCTTCGCCTTGACATTGTCGATGGTGTCTGATGACTCCAC 2189 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||| || ||||||||||| || ||||| ||||||||||||||| Sbjct 2188 CTCCAACGTAATGGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 2140 Score = 143 bits (158), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || || ||| ||||| |||||||| ||||| Sbjct 1911 CCGCCACGAAGACGAAGAACGAGGTGAAGGGTAGACTCTTTCTGGATGTTATAATCGGAC 1852 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||| ||||| || |||||||||||||| | ||| Sbjct 1851 AGCGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCAGGAGGA 1792 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||| || | || | ||||| |||||||| Sbjct 1791 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCG--ATGGTGTCAGACGACTCCA 1734 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| ||| || ||||| ||||| || ||||| || || ||||||||| Sbjct 1733 CCTCCAGCGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 1684 >seq1236 Length=761 Score = 98.7 bits (108), Expect = 9e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || || || || || || ||||||||| ||||| || ||||| Sbjct 161 GCCTCCACGGAGACGCAAGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGA 220 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||| ||||| | || || ||||||||||| ||||| || |||||||||||||| Sbjct 221 GAGCGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTC 274 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || || | |||||| || || || || ||||| |||||||||| |||| | |||||| Sbjct 6 TCTTCCAACTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTA 65 Query 41768 TCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 ||| ||| ||| ||| ||| | | | ||||||| ||||| ||||||| ||| || Sbjct 66 TCCTGGATCTTTGCCTT-AACATTGTCGATAGTGTCGGATGACTCTACCTCCAACGTGAT 124 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||||| || || || || || ||||||||| Sbjct 125 GGTTTTACCCGTGAGGGTTTTGACAAAGATCTGCATG 161 >seq6278 Length=62549 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 41641 GCGTAGACGTAAC-----ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||| ||||||| | || || || |||||| ||||||||| ||||| |||||| | Sbjct 46603 GCGCAGACGTACCGAAGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTG 46662 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| ||||| || ||||| || |||||||||||||| | |||| Sbjct 46663 AGGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGA 46722 Query 41756 A 41756 | Sbjct 46723 A 46723 >seq4824 Length=32535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| |||||||||||||||||| || || Sbjct 158 GCCACCACGAAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGA 99 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || || | |||||| || ||||| || ||||||||||| || | || Sbjct 98 GAGCGTACGACCATCTTCCAACTGCTTCCCTGCGAAGATAAGGCGCTGTTGATCAGGAGG 39 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | || ||||||||| ||| | || | ||||| Sbjct 38 GATGCCTTCCTTGTCC-TGAATCTTCGCCTTCA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462265611431600