Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq544 105 1e-17
seq784 104 5e-17
seq392 104 5e-17
seq350 104 5e-17
seq64 98.7 2e-15
seq243 86.0 1e-11
>seq544
Length=109881
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 40443 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 40384
Query 165769 CCCCACGATGGGC 165781
|||||| |||||
Sbjct 40383 CCCCACATTGGGC 40371
>seq784
Length=23321
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 20773 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 20714
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 20713 CCCACATTGGGC 20702
>seq392
Length=45290
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 23122 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 23181
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 23182 CCCACATTGGGC 23193
>seq350
Length=83028
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 27255 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 27314
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 27315 CCCACATTGGGC 27326
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 38671 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 38612
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 38611 CCCACATTGGGC 38600
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 40546 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 40605
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 40606 CCCACATTGGGC 40617
>seq64
Length=12022
Score = 98.7 bits (108), Expect = 2e-15
Identities = 155/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445
||||| | ||||| || || | ||| ||||||||| | ||||| | || |||||
Sbjct 6328 ATCATCGCCGAAGCCGTCGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCC-GTCGC 6386
Query 230446 CTT-ATTGGCATGAACGCTGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCA 230503
||| || || |||||| | || || ||| | ||||||||||| || || || |||||
Sbjct 6387 CTTGATCGGTATGAACTC-GACGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGC 6445
Query 230504 TTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGG 230563
| | || || || || |||| || | |||||| | ||||||| || | | ||||
Sbjct 6446 TGCTCGTCGCGCTCGGGAACGACAAGCTCTACAACACGGAGAACCCTTTCGATTGGATGG 6505
Query 230564 AGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600
|||| || ||| | | || |||||||||||||||||
Sbjct 6506 AGCTGATCTCGATGGAGGGAAAGACCAACTTCTTCGA 6542
>seq243
Length=9243
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505
|| || ||||||||| | || || ||| | ||||||||||| || || |||||||| |
Sbjct 224 CTGATCGGCATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTG 283
Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565
| || || || || |||| || | ||||| | | ||||| || | ||||||||
Sbjct 284 CTCGTCGCGCTCGGCAACGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGAC 343
Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600
| || ||| | | || |||||||||||||||||
Sbjct 344 ATGATCTCGATGGAGGGCAAGACCAACTTCTTCGA 378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057809985815420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |