Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq544 105 1e-17 seq784 104 5e-17 seq392 104 5e-17 seq350 104 5e-17 seq64 98.7 2e-15 seq243 86.0 1e-11 >seq544 Length=109881 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 40443 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 40384 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 40383 CCCCACATTGGGC 40371 >seq784 Length=23321 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 20773 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 20714 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 20713 CCCACATTGGGC 20702 >seq392 Length=45290 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 23122 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 23181 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 23182 CCCACATTGGGC 23193 >seq350 Length=83028 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 27255 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 27314 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 27315 CCCACATTGGGC 27326 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 38671 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 38612 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 38611 CCCACATTGGGC 38600 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 40546 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 40605 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 40606 CCCACATTGGGC 40617 >seq64 Length=12022 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| | ||||| || || | ||| ||||||||| | ||||| | || ||||| Sbjct 6328 ATCATCGCCGAAGCCGTCGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCC-GTCGC 6386 Query 230446 CTT-ATTGGCATGAACGCTGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCA 230503 ||| || || |||||| | || || ||| | ||||||||||| || || || ||||| Sbjct 6387 CTTGATCGGTATGAACTC-GACGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGC 6445 Query 230504 TTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGG 230563 | | || || || || |||| || | |||||| | ||||||| || | | |||| Sbjct 6446 TGCTCGTCGCGCTCGGGAACGACAAGCTCTACAACACGGAGAACCCTTTCGATTGGATGG 6505 Query 230564 AGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600 |||| || ||| | | || ||||||||||||||||| Sbjct 6506 AGCTGATCTCGATGGAGGGAAAGACCAACTTCTTCGA 6542 >seq243 Length=9243 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| | || || ||| | ||||||||||| || || |||||||| | Sbjct 224 CTGATCGGCATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTG 283 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || || || |||| || | ||||| | | ||||| || | |||||||| Sbjct 284 CTCGTCGCGCTCGGCAACGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGAC 343 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600 | || ||| | | || ||||||||||||||||| Sbjct 344 ATGATCTCGATGGAGGGCAAGACCAACTTCTTCGA 378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057809985815420