Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq64 167 2e-36 seq544 136 4e-27 seq100 136 4e-27 seq381 129 6e-25 seq243 129 6e-25 seq893 114 1e-20 seq236 91.5 2e-13 >seq64 Length=12022 Score = 167 bits (184), Expect = 2e-36 Identities = 131/157 (83%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 |||||||||||| ||||||||||| || | || || ||||||||||| || |||||||| Sbjct 5579 CGACTGGGAGCGGTTGAACGACAAGGAACAGCACTTTATCAAGCACGTTCTCGCCTTTTT 5638 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 ||||||| |||||||||||||||||||| || |||||||| ||| | || || || Sbjct 5639 CGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCGAGCGGTTCTCGTCCGAAGTTCA 5698 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 || ||||||||||| |||||||||||||| |||||| Sbjct 5699 AGTAGCCGAGGCGCGCTGCTTCTACGGCTTCCAGATC 5735 Score = 113 bits (124), Expect = 5e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGG-CAGAGAGGCCGC 117027 || ||| |||| |||| ||||| |||||| |||| |||||| | | | || |||| | Sbjct 5993 CCTTGCATCAAGAAGAAAGCCGACTGGGCGTTGCGATGGATCTCTGATCCGA-AGGCAGT 6051 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 |||||||| || || | || ||||| || ||||||||| | || || || || || Sbjct 6052 GTTCGGCGAACGACTCATCGCGTTCGCAGCGGTCGAGGGCATATTTTTCTCCGGGTCGTT 6111 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTT 117138 ||| |||| |||||||||||||| ||||| || ||||||||| |||| || Sbjct 6112 CGCGTCCATCTTTTGGCTCAAGAAGCGCGGGCTGATGCCCGGCTTGACCTT 6162 >seq544 Length=109881 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||||||||| || |||||| |||| ||||| | |||||| | | |||| |||| Sbjct 82796 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAA 82738 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| |||||||||||| | |||||||| || ||||||| || || Sbjct 82737 GGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGG 82678 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| ||||| || ||||||||||||||||||||| | || || Sbjct 82677 CAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 82618 Query 40890 GCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | |||||| | || || Sbjct 82617 CCACCTCGTCCTCCGCTTGCGCGGTGG 82591 >seq100 Length=52976 Score = 136 bits (150), Expect = 4e-27 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027 || ||| |||| |||||||||| ||||| |||| |||||| | | | || || || Sbjct 52785 CCCTGCATCAAGAAGAAGGCCGACTGGGCTATGCGGTGGATCTCGGAC-GACCGGTCCAT 52843 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||| || || |||||||| || ||||| |||||||||||| ||||||| |||||| || Sbjct 52844 CTTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 52903 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 |||| |||| || ||||||||||| ||||| |||||||| || || || ||| Sbjct 52904 CGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCACCTTC 52955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAG-CGCT--TGAACGACAACGAGCGCCATTT 116745 ||| || |||||||||| || ||||||| || | || ||| ||||| || Sbjct 52286 GGATCTCTCCAAGGACATGAATCACTGGGACACGAAGCTCAAGGACGACGAGAAGTTCTT 52345 Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 |||||||||||| |||||||| || |||||| |||||||||||||||||||| |||| Sbjct 52346 CATCAAGCACGTACTGGCCTTCTTTGCCGCCTCGGACGGCATCGTCAACGAGAACTTGGT 52405 Query 116806 CGAGCGTTTCG 116816 |||||| |||| Sbjct 52406 CGAGCGGTTCG 52416 >seq381 Length=90481 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || ||||| || || ||||| |||| ||||| || | Sbjct 282 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCCTCG 223 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||||||||| | ||||| Sbjct 222 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 164 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| ||||||||| || ||||| Sbjct 163 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 104 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| | || || || || || Sbjct 103 CATCCAAAAGGAGTCGACCCTCCACCTCGT 74 >seq243 Length=9243 Score = 129 bits (142), Expect = 6e-25 Identities = 207/295 (70%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||||||||| || |||||||||||| | || ||| | Sbjct 65 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 124 Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | | |||||| | | || | || ||| | ||| || ||| |||||||| Sbjct 125 CACCTCGAACGCCGACCGCACCCCGACACG-GTCGAGCGCATCATCCGCGAGGCGGTCGC 183 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 |||||||| ||||| ||||| ||||| || || ||| | || | || | || Sbjct 184 GATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAACTCGGA 243 Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 |||| || ||||||||||| ||||||||| || |||| ||| ||| | | || Sbjct 244 CCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTCGGCAACGA 303 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| ||||| || |||||||| | ||||||||| || | ||||| ||||| Sbjct 304 AAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 358 >seq893 Length=83276 Score = 114 bits (126), Expect = 1e-20 Identities = 109/138 (79%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || ||||| Sbjct 39123 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCAT 39181 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || ||||| ||||| || |||| ||||||||| |||||||||||||||||||| Sbjct 39182 CTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGA 39241 Query 40881 GGCCACGCTGCATCTAGT 40898 | | || || || || || Sbjct 39242 GTCGACCCTCCACCTCGT 39259 >seq236 Length=10160 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 ||||||||||| | |||||||| || ||||||| || ||||| ||||| || |||| Sbjct 10159 GAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGC 10100 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| || ||||||||||| |||||| | || || || || || Sbjct 10099 CGCACCCTCTCGGATTACAACATCCAAAAGGAGTCGACCCTCCACCTCGT 10050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212540791840