Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq64 167 2e-36
seq544 136 4e-27
seq100 136 4e-27
seq381 129 6e-25
seq243 129 6e-25
seq893 114 1e-20
seq236 91.5 2e-13
>seq64
Length=12022
Score = 167 bits (184), Expect = 2e-36
Identities = 131/157 (83%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769
|||||||||||| ||||||||||| || | || || ||||||||||| || ||||||||
Sbjct 5579 CGACTGGGAGCGGTTGAACGACAAGGAACAGCACTTTATCAAGCACGTTCTCGCCTTTTT 5638
Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829
||||||| |||||||||||||||||||| || |||||||| ||| | || || ||
Sbjct 5639 CGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCGAGCGGTTCTCGTCCGAAGTTCA 5698
Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866
|| ||||||||||| |||||||||||||| ||||||
Sbjct 5699 AGTAGCCGAGGCGCGCTGCTTCTACGGCTTCCAGATC 5735
Score = 113 bits (124), Expect = 5e-20
Identities = 129/171 (75%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGG-CAGAGAGGCCGC 117027
|| ||| |||| |||| ||||| |||||| |||| |||||| | | | || |||| |
Sbjct 5993 CCTTGCATCAAGAAGAAAGCCGACTGGGCGTTGCGATGGATCTCTGATCCGA-AGGCAGT 6051
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
|||||||| || || | || ||||| || ||||||||| | || || || || ||
Sbjct 6052 GTTCGGCGAACGACTCATCGCGTTCGCAGCGGTCGAGGGCATATTTTTCTCCGGGTCGTT 6111
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTT 117138
||| |||| |||||||||||||| ||||| || ||||||||| |||| ||
Sbjct 6112 CGCGTCCATCTTTTGGCTCAAGAAGCGCGGGCTGATGCCCGGCTTGACCTT 6162
>seq544
Length=109881
Score = 136 bits (150), Expect = 4e-27
Identities = 156/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769
||||||||||| || |||||| |||| ||||| | |||||| | | |||| ||||
Sbjct 82796 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAA 82738
Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829
|| || || | ||||| |||||||||||| | |||||||| || ||||||| || ||
Sbjct 82737 GGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGG 82678
Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889
||| ||||| || |||| ||||| || ||||||||||||||||||||| | || ||
Sbjct 82677 CAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 82618
Query 40890 GCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || || | |||||| | || ||
Sbjct 82617 CCACCTCGTCCTCCGCTTGCGCGGTGG 82591
>seq100
Length=52976
Score = 136 bits (150), Expect = 4e-27
Identities = 135/172 (78%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027
|| ||| |||| |||||||||| ||||| |||| |||||| | | | || || ||
Sbjct 52785 CCCTGCATCAAGAAGAAGGCCGACTGGGCTATGCGGTGGATCTCGGAC-GACCGGTCCAT 52843
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||| || || |||||||| || ||||| |||||||||||| ||||||| |||||| ||
Sbjct 52844 CTTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 52903
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
|||| |||| || ||||||||||| ||||| |||||||| || || || |||
Sbjct 52904 CGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCACCTTC 52955
Score = 95.1 bits (104), Expect = 1e-14
Identities = 101/131 (77%), Gaps = 3/131 (2%)
Strand=Plus/Plus
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAG-CGCT--TGAACGACAACGAGCGCCATTT 116745
||| || |||||||||| || ||||||| || | || ||| ||||| ||
Sbjct 52286 GGATCTCTCCAAGGACATGAATCACTGGGACACGAAGCTCAAGGACGACGAGAAGTTCTT 52345
Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805
|||||||||||| |||||||| || |||||| |||||||||||||||||||| ||||
Sbjct 52346 CATCAAGCACGTACTGGCCTTCTTTGCCGCCTCGGACGGCATCGTCAACGAGAACTTGGT 52405
Query 116806 CGAGCGTTTCG 116816
|||||| ||||
Sbjct 52406 CGAGCGGTTCG 52416
>seq381
Length=90481
Score = 129 bits (142), Expect = 6e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || ||||| || || ||||| |||| ||||| || |
Sbjct 282 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCCTCG 223
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| |||||| || || | ||||| ||||||||||| | |||||
Sbjct 222 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 164
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| || ||||| ||||| || |||| ||||||||| || |||||
Sbjct 163 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 104
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||| |||||| | || || || || ||
Sbjct 103 CATCCAAAAGGAGTCGACCCTCCACCTCGT 74
>seq243
Length=9243
Score = 129 bits (142), Expect = 6e-25
Identities = 207/295 (70%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||||| | ||||||||||| || |||||||||||| | || ||| |
Sbjct 65 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 124
Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261
|| | | | |||||| | | || | || ||| | ||| || ||| ||||||||
Sbjct 125 CACCTCGAACGCCGACCGCACCCCGACACG-GTCGAGCGCATCATCCGCGAGGCGGTCGC 183
Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321
|||||||| ||||| ||||| ||||| || || ||| | || | || | ||
Sbjct 184 GATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAACTCGGA 243
Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381
|||| || ||||||||||| ||||||||| || |||| ||| ||| | | ||
Sbjct 244 CCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTCGGCAACGA 303
Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436
||| ||||| || |||||||| | ||||||||| || | ||||| |||||
Sbjct 304 AAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 358
>seq893
Length=83276
Score = 114 bits (126), Expect = 1e-20
Identities = 109/138 (79%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| |||||| || || | ||||| |||||||||||| | |||||||| || |||||
Sbjct 39123 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCAT 39181
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
|| || ||||| ||||| || |||| ||||||||| ||||||||||||||||||||
Sbjct 39182 CTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGA 39241
Query 40881 GGCCACGCTGCATCTAGT 40898
| | || || || || ||
Sbjct 39242 GTCGACCCTCCACCTCGT 39259
>seq236
Length=10160
Score = 91.5 bits (100), Expect = 2e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848
||||||||||| | |||||||| || ||||||| || ||||| ||||| || ||||
Sbjct 10159 GAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGC 10100
Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||| || ||||||||||| |||||| | || || || || ||
Sbjct 10099 CGCACCCTCTCGGATTACAACATCCAAAAGGAGTCGACCCTCCACCTCGT 10050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515212540791840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |