Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq381 134 1e-26
seq544 109 5e-19
seq893 91.5 1e-13
seq236 84.2 2e-11
>seq381
Length=90481
Score = 134 bits (148), Expect = 1e-26
Identities = 159/214 (74%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| ||||| ||||||||||| | ||||| |||||||||||
Sbjct 79 GTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTG 138
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || || ||||||| |||||||| ||||| || |||||||||||||| || ||
Sbjct 139 CTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 198
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||||||| | ||||||||||| || | ||| || || ||
Sbjct 199 GGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTACCCGT 258
Query 118715 CAGAGTTTTTACAAAAATCTGCATGGCTTATTCT 118748
||| || || ||||| || ||||||| |||||||
Sbjct 259 CAGGGTCTTGACAAAGATTTGCATGG-TTATTCT 291
>seq544
Length=109881
Score = 109 bits (120), Expect = 5e-19
Identities = 149/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| ||||| || | | || | ||||| || ||||| || || |||||||| ||
Sbjct 82589 TACCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 82648
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| |||||| ||||||||||| || || || |||||||||||||||| ||||| |
Sbjct 82649 AAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGG 82708
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| |||||||||||||| || || || || | |||| ||||| | |||||
Sbjct 82709 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 82768
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAG 118717
|||||| ||| | ||| ||||| || ||
Sbjct 82769 CCTCGAGGGTGATCGTCTTGCCCGTGAG 82796
>seq893
Length=83276
Score = 91.5 bits (100), Expect = 1e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| || | ||||| |||||||||||
Sbjct 39254 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 39195
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || || |||||||||||||||| ||||| || |||||||||||||| || ||
Sbjct 39194 CTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 39135
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699
|| || | |||| ||||||| ||||||||| | |||
Sbjct 39134 GGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCAAGGGT 39090
>seq236
Length=10160
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| ||||| ||||||||||| | ||||| |||||||||||
Sbjct 10055 GTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTG 10114
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640
|| || || ||||||| |||||||| ||||| || |||||||||
Sbjct 10115 CTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 10160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433824932923528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |