Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq381 134 1e-26 seq544 109 5e-19 seq893 91.5 1e-13 seq236 84.2 2e-11 >seq381 Length=90481 Score = 134 bits (148), Expect = 1e-26 Identities = 159/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| ||||| ||||||||||| | ||||| ||||||||||| Sbjct 79 GTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTG 138 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || ||||||| |||||||| ||||| || |||||||||||||| || || Sbjct 139 CTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 198 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||||| | ||||||||||| || | ||| || || || Sbjct 199 GGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTACCCGT 258 Query 118715 CAGAGTTTTTACAAAAATCTGCATGGCTTATTCT 118748 ||| || || ||||| || ||||||| ||||||| Sbjct 259 CAGGGTCTTGACAAAGATTTGCATGG-TTATTCT 291 >seq544 Length=109881 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| || | | || | ||||| || ||||| || || |||||||| || Sbjct 82589 TACCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 82648 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||||||||||| || || || |||||||||||||||| ||||| | Sbjct 82649 AAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGG 82708 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| ||||| | ||||| Sbjct 82709 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 82768 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAG 118717 |||||| ||| | ||| ||||| || || Sbjct 82769 CCTCGAGGGTGATCGTCTTGCCCGTGAG 82796 >seq893 Length=83276 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 39254 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 39195 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||||||||||||||| ||||| || |||||||||||||| || || Sbjct 39194 CTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 39135 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 || || | |||| ||||||| ||||||||| | ||| Sbjct 39134 GGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCAAGGGT 39090 >seq236 Length=10160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| ||||| ||||||||||| | ||||| ||||||||||| Sbjct 10055 GTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTG 10114 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 || || || ||||||| |||||||| ||||| || ||||||||| Sbjct 10115 CTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 10160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433824932923528