Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq381 134 2e-26 seq544 105 8e-18 >seq381 Length=90481 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || |||||||| | || || || |||| || |||||||| || || || Sbjct 91 CTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 150 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| ||| | || |||||||||| ||| || |||| ||| Sbjct 151 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 209 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||| || || ||||| || ||||| | Sbjct 210 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGA 269 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 270 CAAAGATTTGCAT 282 >seq544 Length=109881 Score = 105 bits (116), Expect = 8e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||| || |||| || |||||||| || || || Sbjct 82626 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 82685 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 82686 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 82744 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | | ||||||| ||| || || |||| ||||| || |||||||| || Sbjct 82745 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAG 82796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810209257520