Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq544 105 4e-18
seq381 98.7 6e-16
seq893 86.0 4e-12
>seq544
Length=109881
Score = 105 bits (116), Expect = 4e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||||| | || || ||||| | || || ||||| ||||||||||| ||
Sbjct 82591 CCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 82650
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||||||| || || ||||| |||||||||||| |||
Sbjct 82651 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 82710
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | |||| |||| ||| |||||
Sbjct 82711 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 82770
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368
|| | ||||| || ||||| |||||
Sbjct 82771 TCGAGGGTGATCGTCTTGCCCGTGAG 82796
>seq381
Length=90481
Score = 98.7 bits (108), Expect = 6e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || || ||||| | || || || || |||||||| || ||
Sbjct 56 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAG 115
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||||||| || || ||||| |||||||||||| ||
Sbjct 116 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGG 175
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | |||| || | || |||||
Sbjct 176 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 235
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||| || || || || || || || |||||||| |||||
Sbjct 236 TCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 282
>seq893
Length=83276
Score = 86.0 bits (94), Expect = 4e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||| || || ||| |||| || | ||||||||| || ||
Sbjct 39241 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 39182
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
||||| |||||||||||| ||| | || ||||||||| ||||| ||| | | |
Sbjct 39181 ATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 39122
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353
| |||| || | ||| ||||| || | |||||
Sbjct 39121 TCGATCGTGTCCGACGACTCGACCTCAAGGGTGAT 39087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323067928687040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |