Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq985 168 1e-36
seq813 96.9 7e-15
seq64 95.1 3e-14
seq243 84.2 5e-11
>seq985
Length=76026
Score = 168 bits (186), Expect = 1e-36
Identities = 445/672 (66%), Gaps = 13/672 (2%)
Strand=Plus/Minus
Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885
||| | ||||||||| || ||| ||||| || || || || ||||| | | |||
Sbjct 19136 CTTCGGTTTCAAAACTCTCGAGCGCTCGTACCTGCTGCGGATCGACGGCAAAGTGGCGGA 19077
Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGAT--GACATAGAG 248943
|| |||||||||| | ||||| || || ||||| || ||| ||| ||||| ||
Sbjct 19076 GCGTCCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCAC--GGACCCGACATCAAG 19019
Query 248944 AGCGTGCT--CGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGA 249001
|||||| |||||| |||| | ||| || |||| | || || || | || |
Sbjct 19018 --CGTGCTATCGAGACCTACAACTTGATGTCGGAGCGCTACTTCACTCACGCGTCGCCCA 18961
Query 249002 CGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061
|||| ||||||||||||||| | || || || || ||||| || | ||||||
Sbjct 18960 CGCTGTTCAACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGC 18901
Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAA 249120
| |||||||| |||| ||||| || |||||||| || || | ||| || || ||
Sbjct 18900 AGGACGACTCGATCGAAGGCATCTACGACACGCTCAAGACTTGC-GCGCTCATCTCCAAG 18842
Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180
|||||||| |||||||| || | ||||||||| |||| ||||||||||||
Sbjct 18841 ACTGCGGGCGGGATCGGTCTTTCGATTCACAACATCCGCGCGACCGGTTCGTACATCGCG 18782
Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCC 249240
|| || || || | | || ||||| || | || || ||| | ||| ||
Sbjct 18781 GGCACGAACGGCTACTCGAACGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCG 18722
Query 249241 AGGTTCATCAACCAGGCCGG---GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297
| | | | |||| | || ||| || ||||||| || || | || |
Sbjct 18721 CGTTACGTGGACCAAGGAGGCAATAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCG 18662
Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357
|||||||| || || || || ||||| ||| | |||||| ||||||| || |
Sbjct 18661 TGGCACGCGGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAAGAAGAAGTC 18602
Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417
| ||||| |||||||||| || |||||| || ||||| | |||||| |||||| ||
Sbjct 18601 CGCGCGCGAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTCTTCATGGAACGCGTCGAG 18542
Query 249418 GCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACAC 249477
||| ||| ||| |||| | | || |||| || || | |||| ||| | ||
Sbjct 18541 CAGAACGCCGAGTGGCCGCTGTTCTGCCCCGCCGAAGCGCCCGGCCTCCACGAGGTCTAC 18482
Query 249478 GGCGCCGACTTC 249489
|||| ||| |||
Sbjct 18481 GGCGACGAGTTC 18470
>seq813
Length=40068
Score = 96.9 bits (106), Expect = 7e-15
Identities = 103/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 254195 ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGA 254254
|||||||| ||||| |||||| || | ||||| |||||||| ||| | |||||| ||
Sbjct 7974 ACCCGGCT--CCGCCGTTCAAGATCATCATCCTCGACGAGGCCGACTCGATGACGCAGGA 8031
Query 254255 CGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCT 254314
|||||| || ||||| ||||||| ||||| || ||||| | || || || |||||
Sbjct 8032 CGCGCAATCTGCCCTGCGCCGAATCATGGAAACCTACTCCAAGATCACTCGCTTCTGCCT 8091
Query 254315 GGTGTGCAACTACGT 254329
| |||||||||||
Sbjct 8092 CATCTGCAACTACGT 8106
>seq64
Length=12022
Score = 95.1 bits (104), Expect = 3e-14
Identities = 124/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 157275 TCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTGG 157334
|||| || |||||||||||||||| | || |||| |||||||| ||||| |||||
Sbjct 6544 TCTCGAAGAAGTTGGTCTTTCCCTCCATCGAGATCAGCTCCATCCAATCGAAAGGGTTCT 6485
Query 157335 CGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTGA 157394
| |||||| | |||||||| ||| ||| | ||| |||||||||||||| ||
Sbjct 6484 CCGTGTTGTAGAGCTTGTCGTTCCCGAGCGCGACGAGCAGCCGGTCCGCCACAAACTCGA 6425
Query 157395 TGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGC 157446
|||||| ||| | || | | |||||||| | |||||||| || ||
Sbjct 6424 TGTACTGGCACATCAACGTCGAGTTCATACCGATCAAGGCGACGGGCAGTGC 6373
>seq243
Length=9243
Score = 84.2 bits (92), Expect = 5e-11
Identities = 124/173 (72%), Gaps = 2/173 (1%)
Strand=Plus/Minus
Query 157275 TCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTGG 157334
|||| || ||||||||||| |||| | || ||||||||||| | ||||| |||||||
Sbjct 380 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGG 321
Query 157335 -CGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393
||| ||||| | ||| |||| || ||| | ||| | ||| || ||||||| |
Sbjct 320 TCGCC-TTGTAAATCTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCG 262
Query 157394 ATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGC 157446
||||||| |||| | | | | || ||||| ||| ||||||||||||
Sbjct 261 ATGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACGGGAAGCGC 209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073752174608512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |