Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq985 168 1e-36 seq813 96.9 7e-15 seq64 95.1 3e-14 seq243 84.2 5e-11 >seq985 Length=76026 Score = 168 bits (186), Expect = 1e-36 Identities = 445/672 (66%), Gaps = 13/672 (2%) Strand=Plus/Minus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||| | ||||||||| || ||| ||||| || || || || ||||| | | ||| Sbjct 19136 CTTCGGTTTCAAAACTCTCGAGCGCTCGTACCTGCTGCGGATCGACGGCAAAGTGGCGGA 19077 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGAT--GACATAGAG 248943 || |||||||||| | ||||| || || ||||| || ||| ||| ||||| || Sbjct 19076 GCGTCCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCAC--GGACCCGACATCAAG 19019 Query 248944 AGCGTGCT--CGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGA 249001 |||||| |||||| |||| | ||| || |||| | || || || | || | Sbjct 19018 --CGTGCTATCGAGACCTACAACTTGATGTCGGAGCGCTACTTCACTCACGCGTCGCCCA 18961 Query 249002 CGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 |||| ||||||||||||||| | || || || || ||||| || | |||||| Sbjct 18960 CGCTGTTCAACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGC 18901 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAA 249120 | |||||||| |||| ||||| || |||||||| || || | ||| || || || Sbjct 18900 AGGACGACTCGATCGAAGGCATCTACGACACGCTCAAGACTTGC-GCGCTCATCTCCAAG 18842 Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180 |||||||| |||||||| || | ||||||||| |||| |||||||||||| Sbjct 18841 ACTGCGGGCGGGATCGGTCTTTCGATTCACAACATCCGCGCGACCGGTTCGTACATCGCG 18782 Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCC 249240 || || || || | | || ||||| || | || || ||| | ||| || Sbjct 18781 GGCACGAACGGCTACTCGAACGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCG 18722 Query 249241 AGGTTCATCAACCAGGCCGG---GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297 | | | | |||| | || ||| || ||||||| || || | || | Sbjct 18721 CGTTACGTGGACCAAGGAGGCAATAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCG 18662 Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357 |||||||| || || || || ||||| ||| | |||||| ||||||| || | Sbjct 18661 TGGCACGCGGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAAGAAGAAGTC 18602 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 | ||||| |||||||||| || |||||| || ||||| | |||||| |||||| || Sbjct 18601 CGCGCGCGAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTCTTCATGGAACGCGTCGAG 18542 Query 249418 GCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACAC 249477 ||| ||| ||| |||| | | || |||| || || | |||| ||| | || Sbjct 18541 CAGAACGCCGAGTGGCCGCTGTTCTGCCCCGCCGAAGCGCCCGGCCTCCACGAGGTCTAC 18482 Query 249478 GGCGCCGACTTC 249489 |||| ||| ||| Sbjct 18481 GGCGACGAGTTC 18470 >seq813 Length=40068 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 254195 ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGA 254254 |||||||| ||||| |||||| || | ||||| |||||||| ||| | |||||| || Sbjct 7974 ACCCGGCT--CCGCCGTTCAAGATCATCATCCTCGACGAGGCCGACTCGATGACGCAGGA 8031 Query 254255 CGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCT 254314 |||||| || ||||| ||||||| ||||| || ||||| | || || || ||||| Sbjct 8032 CGCGCAATCTGCCCTGCGCCGAATCATGGAAACCTACTCCAAGATCACTCGCTTCTGCCT 8091 Query 254315 GGTGTGCAACTACGT 254329 | ||||||||||| Sbjct 8092 CATCTGCAACTACGT 8106 >seq64 Length=12022 Score = 95.1 bits (104), Expect = 3e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 157275 TCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTGG 157334 |||| || |||||||||||||||| | || |||| |||||||| ||||| ||||| Sbjct 6544 TCTCGAAGAAGTTGGTCTTTCCCTCCATCGAGATCAGCTCCATCCAATCGAAAGGGTTCT 6485 Query 157335 CGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTGA 157394 | |||||| | |||||||| ||| ||| | ||| |||||||||||||| || Sbjct 6484 CCGTGTTGTAGAGCTTGTCGTTCCCGAGCGCGACGAGCAGCCGGTCCGCCACAAACTCGA 6425 Query 157395 TGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGC 157446 |||||| ||| | || | | |||||||| | |||||||| || || Sbjct 6424 TGTACTGGCACATCAACGTCGAGTTCATACCGATCAAGGCGACGGGCAGTGC 6373 >seq243 Length=9243 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 157275 TCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTGG 157334 |||| || ||||||||||| |||| | || ||||||||||| | ||||| ||||||| Sbjct 380 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGG 321 Query 157335 -CGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393 ||| ||||| | ||| |||| || ||| | ||| | ||| || ||||||| | Sbjct 320 TCGCC-TTGTAAATCTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCG 262 Query 157394 ATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGC 157446 ||||||| |||| | | | | || ||||| ||| |||||||||||| Sbjct 261 ATGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACGGGAAGCGC 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073752174608512