Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq985 266 3e-66 seq64 123 2e-23 seq381 102 7e-17 seq544 87.8 2e-12 >seq985 Length=76026 Score = 266 bits (294), Expect = 3e-66 Identities = 504/737 (68%), Gaps = 6/737 (1%) Strand=Plus/Plus Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || |||||||||| ||||| | |||| || || |||| Sbjct 18345 TCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATGGCGTACCAC 18404 Query 23204 ATAGTCTGAGCGTGAACACGT-CGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262 | |||| || || ||| ||| | | || || | ||||||||| | | | | Sbjct 18405 AGCTTCTGCGCC-GAGATCGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAAAAG 18463 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 ||| || ||| | ||||| ||| |||||||||| || || || | || Sbjct 18464 CGCCCTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGCGCTTCGGCGGGGCAGAACAG 18523 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| | || | || |||||| ||| || || || || ||||| || ||| | Sbjct 18524 CGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCACAGCGCGAA 18583 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||| || || || ||||| || || ||||||||| |||||| | || | ||||| Sbjct 18584 GAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTC 18643 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || | |||||| ||||||||||| ||||| | || |||||||| |||| ||||||||| Sbjct 18644 GAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTATTGCC 18703 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 || || || |||||||| |||||||||||| | || | ||||| ||||||| ||||| Sbjct 18704 TCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGCCGTT 18763 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 || |||| |||||| | |||||| | || || | |||||||| | ||| Sbjct 18764 CGAGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGGATGTTGTGAA--TCGAA 18821 Query 23623 --ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 ||| || || || | | || || || | |||||| || || |||||||||||| Sbjct 18822 AGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGTAGATG 18881 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740 || ||||| ||| || | | | ||| | ||| || || || | ||||| | ||| Sbjct 18882 CCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGTGGGGG 18941 Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 ||| |||| |||||| || || ||||| || ||||| | | |||||| | ||| Sbjct 18942 GTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGACATCAAGTTG 19001 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || ||||| || | ||||| |||||| || |||| ||| |||||||| | | Sbjct 19002 TAGGTCTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACGGCAACGCGCATGAGC 19061 Query 23861 ATGTATTGAGGTCTCTC 23877 |||| ||||| | ||| Sbjct 19062 ATGTGCTGAGGACGCTC 19078 >seq64 Length=12022 Score = 123 bits (136), Expect = 2e-23 Identities = 222/320 (69%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | || ||||| ||||| || ||||| || || ||||| ||||| | | ||| Sbjct 6229 AACGAGCTCATCTCGCGTGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTTTCT 6288 Query 58137 CACATTGTCAATAAACCGACGCGGGATCGCATCTTGGAC--ATTATCACCGAGGCGGTCG 58194 ||| | | | || | | ||||| | || || || ||| |||| || |||| Sbjct 6289 CACCTCGAACGTCGTCCCGCTCCTCATCGCGT--TGCACGCATCATCGCCGAAGCCGTCG 6346 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 |||||| || ||||| | ||||| || || || || ||| || ||||||||||| Sbjct 6347 AGATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCCTTGATCGGTATGAACTCGA 6406 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAG 58314 ||||||| ||||||| |||||||| || ||| | | |||||| | | || | Sbjct 6407 CGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGC---TGCTCGTCGCGCTCGG-G 6462 Query 58315 AGCGTCA----TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 | || || ||||||||| | || || || |||| ||| | ||||||||| | ||| Sbjct 6463 AACGACAAGCTCTACAACACGGAGAACCCTTTCGATTGGATGGAGCTGATCTCGATGGAG 6522 Query 58371 GGCAAGACAAACTTTTTCGA 58390 || ||||| ||||| ||||| Sbjct 6523 GGAAAGACCAACTTCTTCGA 6542 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 ||||| ||| | || ||||||||||| || ||||| || ||||| || || || || Sbjct 6052 GTTCGGCGAACGACTCATCGCGTTCGCAGCGGTCGAGGGCATATTTTTCTCCGGGTCGTT 6111 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTT 58073 ||| | || |||||| | ||||| ||||| |||||||||||| |||| ||| Sbjct 6112 CGCGTCCATCTTTTGGCTCAAGAAGCGCGGGCTGATGCCCGGCTTGACCTTT 6163 >seq381 Length=90481 Score = 102 bits (112), Expect = 7e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 |||| || ||||||||| || || ||||| ||||| || || |||||||| |||| || Sbjct 290 GAAT-AACCATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTC 232 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 || | || |||| |||| | ||||| | || ||||||||| ||| | ||| Sbjct 231 GAGTCCTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCG 172 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 |||||||||||||| || || || || ||||| ||| | || ||| || | Sbjct 171 CCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCG 112 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| ||||| || ||||| || || || || || Sbjct 111 GATTACAACATCCAAAAGGAGTCGACCCTCCACCTCGTCCT 71 >seq544 Length=109881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || ||||| ||||||||| |||| || || ||||||||| |||| | ||||| Sbjct 82796 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAG 82737 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | || ||||||||| ||| | || ||||||||||||||||| || || || ||| Sbjct 82736 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGC 82677 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || ||| ||| | || || ||||| || || || ||||| || Sbjct 82676 AAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTC 82617 Query 31394 CATCTGGTACT 31404 || || || || Sbjct 82616 CACCTCGTCCT 82606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760638469280