Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq64 96.9 3e-15 seq243 87.8 2e-12 >seq64 Length=12022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 || |||||||| || || || ||||| || || ||||| | ||||| | ||| | || Sbjct 6337 GAAGCCGTCGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCCTTGATCGGT 6396 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||| |||| |||||||| |||||||||||||||| |||||| | ||| | | | Sbjct 6397 ATGAACTCGACGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGCTGCTCGTCGCG 6456 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTT--ATGAACAACATAT 53014 ||||| | ||| | || || | || | || ||||| || ||| | || | Sbjct 6457 CTCGGGAA--CGACAAGCTCTACAACACGGAGAACCCTTTCGATTGGATGGAGCTGATCT 6514 Query 53015 CGCTCGAGGGCAAAACAAACTTTTTCGAGAG 53045 || | ||||| || || ||||| |||||||| Sbjct 6515 CGATGGAGGGAAAGACCAACTTCTTCGAGAG 6545 >seq243 Length=9243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||| |||| || || ||||||| | || ||||| | ||||| || | ||| Sbjct 173 GAGGCGGTCGCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGC 232 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||| || | | |||||| |||||||||||||||| || ||| | || | | | Sbjct 233 ATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCG 292 Query 52957 CTCGGTCAGCCGAAATA-CTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATC 53015 ||||| || | ||| | || || ||| ||||| || |||||| ||| || || Sbjct 293 CTCGG-CAACGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTC 351 Query 53016 GCTCGAGGGCAAAACAAACTTTTTCGAGAG 53045 | | |||||||| || ||||| |||||||| Sbjct 352 GATGGAGGGCAAGACCAACTTCTTCGAGAG 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057588372800