Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq64 96.9 3e-15
seq243 87.8 2e-12
>seq64
Length=12022
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896
|| |||||||| || || || ||||| || || ||||| | ||||| | ||| | ||
Sbjct 6337 GAAGCCGTCGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCCTTGATCGGT 6396
Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956
|||||| |||| |||||||| |||||||||||||||| |||||| | ||| | | |
Sbjct 6397 ATGAACTCGACGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGCTGCTCGTCGCG 6456
Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTT--ATGAACAACATAT 53014
||||| | ||| | || || | || | || ||||| || ||| | || |
Sbjct 6457 CTCGGGAA--CGACAAGCTCTACAACACGGAGAACCCTTTCGATTGGATGGAGCTGATCT 6514
Query 53015 CGCTCGAGGGCAAAACAAACTTTTTCGAGAG 53045
|| | ||||| || || ||||| ||||||||
Sbjct 6515 CGATGGAGGGAAAGACCAACTTCTTCGAGAG 6545
>seq243
Length=9243
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896
||||| |||| || || ||||||| | || ||||| | ||||| || | |||
Sbjct 173 GAGGCGGTCGCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGC 232
Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956
|||||| || | | |||||| |||||||||||||||| || ||| | || | | |
Sbjct 233 ATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCG 292
Query 52957 CTCGGTCAGCCGAAATA-CTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATC 53015
||||| || | ||| | || || ||| ||||| || |||||| ||| || ||
Sbjct 293 CTCGG-CAACGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTC 351
Query 53016 GCTCGAGGGCAAAACAAACTTTTTCGAGAG 53045
| | |||||||| || ||||| ||||||||
Sbjct 352 GATGGAGGGCAAGACCAACTTCTTCGAGAG 381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496057588372800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |