Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq100 104 3e-17
seq409 100 4e-16
seq243 91.5 2e-13
seq64 86.0 9e-12
>seq100
Length=52976
Score = 104 bits (114), Expect = 3e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426
|| ||||| | |||| || ||||||||| |||||| ||| | | || |
Sbjct 52797 AAGAAGGCCGACTGGGCTATGCGGTGGATCTCGGACGACCGGTCCATCTTTGGTGAACGC 52856
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
||||| || ||||||||||| |||||||||||||| ||||| || || |||||||
Sbjct 52857 CTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTC 52916
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
||||||||||||||||| |||||||| || || ||
Sbjct 52917 TGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCAC 52951
>seq409
Length=29703
Score = 100 bits (110), Expect = 4e-16
Identities = 172/250 (69%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506
||||| |||||||| || ||||||| || |||| |||||||| | | || || |
Sbjct 24118 CCGTGGGTCAGGTGACCGCCGTCGGCAAGGCCGAGGCCCATGATGCGGTCCTGGGGCTGG 24177
Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566
| || | ||| | ||||||||||||| |||||||||||||||| || || ||
Sbjct 24178 ATGAGGGCGGTGAAGGCGGCAAAGTTGGCAGTCGAGCCCGAGTACGGCTGGACGTTGACG 24237
Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626
||||| | ||||| | | |||||| ||| |||| ||| || | ||||
Sbjct 24238 CCCCAGACCTTCTCGTCGAGGTGGAACGCCTCGAGGGCGCGCTTCTGGCAGAGGATTTCG 24297
Query 127627 ATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTAC 127686
| |||| | |||||| || || ||||| || ||||| |||||||||||||
Sbjct 24298 AGCTCGTCGACGACCTCGTTGCCGCCGTAGTAGCGGGCGCCGGGGAGACCCTCCGAGTAC 24357
Query 127687 TTGTTGATGA 127696
|||||| |||
Sbjct 24358 TTGTTGGTGA 24367
>seq243
Length=9243
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAA 125716
||| || |||||||| || ||||| | || || |||| |||| |||||||||| |
Sbjct 184 GATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAACTCGGA 243
Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG 125776
|| |||||| ||||||| |||||||| || || || | || || | | |||
Sbjct 244 CCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTC---GGCAA 300
Query 125777 C---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833
| ||||||||||| || | || || || || || ||| || || || | |||||
Sbjct 301 CGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAGGG 360
Query 125834 TAAGACCAACTTTTTCGAGA 125853
||||||||||| |||||||
Sbjct 361 CAAGACCAACTTCTTCGAGA 380
>seq64
Length=12022
Score = 86.0 bits (94), Expect = 9e-12
Identities = 86/109 (79%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAGTT 125472
|| || ||| |||| | || ||||| || || |||||||| || || || |||| |||
Sbjct 6052 GTTCGGCGAACGACTCATCGCGTTCGCAGCGGTCGAGGGCATATTTTTCTCCGGGTCGTT 6111
Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
||| ||||||||||||||||||||||||| || |||||||| ||||
Sbjct 6112 C-GCGTCCATCTTTTGGCTCAAGAAGCGCGGGCTGATGCCCGGCTTGAC 6159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741049621809840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |