Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq100 104 3e-17 seq409 100 4e-16 seq243 91.5 2e-13 seq64 86.0 9e-12 >seq100 Length=52976 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || ||||| | |||| || ||||||||| |||||| ||| | | || | Sbjct 52797 AAGAAGGCCGACTGGGCTATGCGGTGGATCTCGGACGACCGGTCCATCTTTGGTGAACGC 52856 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||||| || ||||||||||| |||||||||||||| ||||| || || ||||||| Sbjct 52857 CTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTC 52916 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||||||||| |||||||| || || || Sbjct 52917 TGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCAC 52951 >seq409 Length=29703 Score = 100 bits (110), Expect = 4e-16 Identities = 172/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| |||||||| || ||||||| || |||| |||||||| | | || || | Sbjct 24118 CCGTGGGTCAGGTGACCGCCGTCGGCAAGGCCGAGGCCCATGATGCGGTCCTGGGGCTGG 24177 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | ||||||||||||| |||||||||||||||| || || || Sbjct 24178 ATGAGGGCGGTGAAGGCGGCAAAGTTGGCAGTCGAGCCCGAGTACGGCTGGACGTTGACG 24237 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626 ||||| | ||||| | | |||||| ||| |||| ||| || | |||| Sbjct 24238 CCCCAGACCTTCTCGTCGAGGTGGAACGCCTCGAGGGCGCGCTTCTGGCAGAGGATTTCG 24297 Query 127627 ATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTAC 127686 | |||| | |||||| || || ||||| || ||||| ||||||||||||| Sbjct 24298 AGCTCGTCGACGACCTCGTTGCCGCCGTAGTAGCGGGCGCCGGGGAGACCCTCCGAGTAC 24357 Query 127687 TTGTTGATGA 127696 |||||| ||| Sbjct 24358 TTGTTGGTGA 24367 >seq243 Length=9243 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAA 125716 ||| || |||||||| || ||||| | || || |||| |||| |||||||||| | Sbjct 184 GATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAACTCGGA 243 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG 125776 || |||||| ||||||| |||||||| || || || | || || | | ||| Sbjct 244 CCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTC---GGCAA 300 Query 125777 C---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 | ||||||||||| || | || || || || || ||| || || || | ||||| Sbjct 301 CGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAGGG 360 Query 125834 TAAGACCAACTTTTTCGAGA 125853 ||||||||||| ||||||| Sbjct 361 CAAGACCAACTTCTTCGAGA 380 >seq64 Length=12022 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAGTT 125472 || || ||| |||| | || ||||| || || |||||||| || || || |||| ||| Sbjct 6052 GTTCGGCGAACGACTCATCGCGTTCGCAGCGGTCGAGGGCATATTTTTCTCCGGGTCGTT 6111 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||| ||||||||||||||||||||||||| || |||||||| |||| Sbjct 6112 C-GCGTCCATCTTTTGGCTCAAGAAGCGCGGGCTGATGCCCGGCTTGAC 6159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049621809840