Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq985 87.8 5e-12 >seq985 Length=76026 Score = 87.8 bits (96), Expect = 5e-12 Identities = 222/331 (67%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 364831 CGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCC 364890 ||||| ||||| | || ||||| | ||| || ||| | || | | ||| || | Sbjct 17460 CGCCGCGTTCTCGCTGGCGAATTCCAGGTCGTCAATCCTTGGCTCTTGAGGGACCTCGTC 17401 Query 364891 GACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTG 364950 |||||||| || |||| ||| ||||||||| ||||| || || || || | Sbjct 17400 GACCGCGGTCTATGGGACGACGCGATGAAGAACACCATCATTGCTCACAACGGCTCGATT 17341 Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||||| | || | || || || ||||| || ||||| ||||| ||||||||| Sbjct 17340 CAGAACGTCCCCAACATCCCCGACGAATTGAAGAGGATCTACAAGACCGTCTGGGAAATT 17281 Query 365011 TC-CATGCGAA-CTC-TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGC 365067 || || ||| || |||| || |||||||||| || || ||||| ||| ||| Sbjct 17280 TCGCA---GAAGGTCGTCATCGACCTGGCGGCCGACCGTGGAGCTTTCATCGACCAGTCG 17224 Query 365068 CAGTCGTTTAACGTATTCATGACTC--AGCCAACCTCCGCCAAGCTTACATCCATGCATT 365125 |||||| | ||| || ||| ||| ||| ||| || |||| || |||||| | Sbjct 17223 CAGTCGCTCAAC--ATCCATCTCTCCTCGCCGACCATGGCGCAGCTCACGAGCATGCACT 17166 Query 365126 TCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||| || |||||| || || ||||| || Sbjct 17165 TCTATGGCTGGAAAAAGGGACTCAAGACCGG 17135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303336333008588