Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq381 120 3e-22 seq243 118 1e-21 seq544 111 1e-19 seq985 104 2e-17 seq64 104 2e-17 seq893 91.5 1e-13 seq236 91.5 1e-13 >seq381 Length=90481 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | ||||||||||||||| ||||||||||| Sbjct 55 GCCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGA 114 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 115 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGG 174 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || || | |||||||| Sbjct 175 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 234 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || ||||| || || || || || || || |||||| Sbjct 235 CTCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACAAAGATTTGCATG 283 >seq243 Length=9243 Score = 118 bits (130), Expect = 1e-21 Identities = 221/318 (69%), Gaps = 5/318 (2%) Strand=Plus/Plus Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAAC 46320 |||||||| || |||||||||||||| || || || |||||||| || ||| || | | Sbjct 65 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCT-TCTC 123 Query 46321 ACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTG 46380 | | | | ||| | | | | |||||||| || | |||| || |||||||| Sbjct 124 GCAC-CTCGAACGCCGACCGCAC-CCCGACACGGTCGAGCGCATCATCCGCGAGGCGGTC 181 Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440 || || ||| | ||||| | || | ||| || |||| ||| | ||||||||| | Sbjct 182 GCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAACTCG 241 Query 46441 CAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAG 46500 | |||||| | |||||||||||||| || ||||| ||||||| || || || Sbjct 242 GACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGC-TCGGCAA 300 Query 46501 CCGAAGCATTTTC-ACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGG 46559 | || |||| | | ||| ||| || || || |||||| ||| ||||| ||||||| Sbjct 301 CGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAGGG 360 Query 46560 CAAAACTAATTTTTTCGA 46577 ||| || || || ||||| Sbjct 361 CAAGACCAACTTCTTCGA 378 >seq544 Length=109881 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| || || || | || | |||||||||||| || |||||||| || Sbjct 82591 CCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 82650 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 82651 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 82710 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||||| Sbjct 82711 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 82770 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | || || || || || Sbjct 82771 TCGAGGGTGATCGTCTTGCCCGTGAG 82796 >seq985 Length=76026 Score = 104 bits (114), Expect = 2e-17 Identities = 299/446 (67%), Gaps = 13/446 (3%) Strand=Plus/Plus Query 146049 AGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCAC 146105 ||||||||||||||||||| |||| |||| |||| || || ||| ||||| | Sbjct 18646 AGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTATTGCCTC 18705 Query 146106 CCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGG 146165 | |||||||||| ||| || ||||||| |||||||| | ||| ||| ||| |||| | | Sbjct 18706 CTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGCCGTTCG 18765 Query 146166 CTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225 ||||||||| || | ||| | ||| | | |||| | | Sbjct 18766 AGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGGATGTTGTGAATCGAAAGAC 18825 Query 146226 CGAGACCG-CCGCCGTACTTGGATAT-AGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGC 146282 ||| ||| |||| || |||||| || ||| |||| |||| |||||| |||||||||| Sbjct 18826 CGATCCCGCCCGCAGT-CTTGGAGATGAGC-GCGCAAGTC-TTGAGCGTGTCGTAGATGC 18882 Query 146283 CGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCG 146342 | || || ||| | ||| || || ||||| || | | |||| || | Sbjct 18883 CTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGTGGGGGG 18942 Query 146343 TCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGA 146401 | || || ||||| ||| || |||||| || || | || | ||||| Sbjct 18943 TACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCG-ACATCAAGTTG 19001 Query 146402 TACGTTTCGATAGC-GTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAG 146460 || || |||||||| |||| |||||| || || ||||| | || ||||||||||| Sbjct 19002 TAGGTCTCGATAGCACGCTTG-ATGTCGGGTCCGTGGATGCCGACGGCAACGCGCATGAG 19060 Query 146461 CATGTGTTGGGGCCGCTCCGCCACTT 146486 |||||| || || ||||||||||||| Sbjct 19061 CATGTGCTGAGGACGCTCCGCCACTT 19086 >seq64 Length=12022 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAAC 46320 |||||||| || ||||| ||||| ||||| || || |||||||| || ||| || | Sbjct 6229 AACGAGCTCATCTCGCGTGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTTT-- 6286 Query 46321 ACTCGCGT-GCACGACAAGCTTGCGCCCGACACCGTGCTGA--GCATGTTCAAGGAGGCG 46377 ||| | | | ||| | | ||| | || || | || |||| || || || Sbjct 6287 -CTCACCTCGAACGTCGTCC---CGCTCCTCATCGCGTTGCACGCATCATCGCCGAAGCC 6342 Query 46378 GTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC 46437 || | || ||||||||||| || || | ||||||||||| ||| || | || |||||| Sbjct 6343 GTCGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCCTTGATCGGTATGAAC 6402 Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT 46487 | || |||||| | |||||||||||||| |||||||| |||||||| Sbjct 6403 TCGACGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGCTGCTCGT 6452 >seq893 Length=83276 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| || |||||||| || | |||||| |||||| ||||||||||| Sbjct 39248 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 39189 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || |||| | |||||||||||| || ||||| || || ||||| Sbjct 39188 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 39144 >seq236 Length=10160 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||||||||||||||| ||||||||||| Sbjct 10032 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAG 10091 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 10092 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGG 10151 Query 131128 ATTCCTTC 131135 || || || Sbjct 10152 ATGCCCTC 10159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472006699234560