Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq381 120 3e-22
seq243 118 1e-21
seq544 111 1e-19
seq985 104 2e-17
seq64 104 2e-17
seq893 91.5 1e-13
seq236 91.5 1e-13
>seq381
Length=90481
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || || | ||| || || | || | ||||||||||||||| |||||||||||
Sbjct 55 GCCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGA 114
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| |||||| |||||| ||||||||||| || |||| | ||||||||||| || ||
Sbjct 115 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGG 174
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || ||||| ||| || ||||| | || | || || | ||||||||
Sbjct 175 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 234
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| || | || ||||| || || || || || || || ||||||
Sbjct 235 CTCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACAAAGATTTGCATG 283
>seq243
Length=9243
Score = 118 bits (130), Expect = 1e-21
Identities = 221/318 (69%), Gaps = 5/318 (2%)
Strand=Plus/Plus
Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAAC 46320
|||||||| || |||||||||||||| || || || |||||||| || ||| || | |
Sbjct 65 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCT-TCTC 123
Query 46321 ACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTG 46380
| | | | ||| | | | | |||||||| || | |||| || ||||||||
Sbjct 124 GCAC-CTCGAACGCCGACCGCAC-CCCGACACGGTCGAGCGCATCATCCGCGAGGCGGTC 181
Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440
|| || ||| | ||||| | || | ||| || |||| ||| | ||||||||| |
Sbjct 182 GCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAACTCG 241
Query 46441 CAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAG 46500
| |||||| | |||||||||||||| || ||||| ||||||| || || ||
Sbjct 242 GACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGC-TCGGCAA 300
Query 46501 CCGAAGCATTTTC-ACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGG 46559
| || |||| | | ||| ||| || || || |||||| ||| ||||| |||||||
Sbjct 301 CGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAGGG 360
Query 46560 CAAAACTAATTTTTTCGA 46577
||| || || || |||||
Sbjct 361 CAAGACCAACTTCTTCGA 378
>seq544
Length=109881
Score = 111 bits (122), Expect = 1e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||||||||| || || || | || | |||||||||||| || |||||||| ||
Sbjct 82591 CCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 82650
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| || |||| | |||||||||||| || |||
Sbjct 82651 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 82710
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| |||||||
Sbjct 82711 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 82770
Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213
|||| ||| | || || || || ||
Sbjct 82771 TCGAGGGTGATCGTCTTGCCCGTGAG 82796
>seq985
Length=76026
Score = 104 bits (114), Expect = 2e-17
Identities = 299/446 (67%), Gaps = 13/446 (3%)
Strand=Plus/Plus
Query 146049 AGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCAC 146105
||||||||||||||||||| |||| |||| |||| || || ||| ||||| |
Sbjct 18646 AGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTATTGCCTC 18705
Query 146106 CCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGG 146165
| |||||||||| ||| || ||||||| |||||||| | ||| ||| ||| |||| | |
Sbjct 18706 CTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGCCGTTCG 18765
Query 146166 CTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225
||||||||| || | ||| | ||| | | |||| | |
Sbjct 18766 AGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGGATGTTGTGAATCGAAAGAC 18825
Query 146226 CGAGACCG-CCGCCGTACTTGGATAT-AGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGC 146282
||| ||| |||| || |||||| || ||| |||| |||| |||||| ||||||||||
Sbjct 18826 CGATCCCGCCCGCAGT-CTTGGAGATGAGC-GCGCAAGTC-TTGAGCGTGTCGTAGATGC 18882
Query 146283 CGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCG 146342
| || || ||| | ||| || || ||||| || | | |||| || |
Sbjct 18883 CTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGTGGGGGG 18942
Query 146343 TCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGA 146401
| || || ||||| ||| || |||||| || || | || | |||||
Sbjct 18943 TACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCG-ACATCAAGTTG 19001
Query 146402 TACGTTTCGATAGC-GTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAG 146460
|| || |||||||| |||| |||||| || || ||||| | || |||||||||||
Sbjct 19002 TAGGTCTCGATAGCACGCTTG-ATGTCGGGTCCGTGGATGCCGACGGCAACGCGCATGAG 19060
Query 146461 CATGTGTTGGGGCCGCTCCGCCACTT 146486
|||||| || || |||||||||||||
Sbjct 19061 CATGTGCTGAGGACGCTCCGCCACTT 19086
>seq64
Length=12022
Score = 104 bits (114), Expect = 2e-17
Identities = 163/230 (71%), Gaps = 9/230 (4%)
Strand=Plus/Plus
Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAAC 46320
|||||||| || ||||| ||||| ||||| || || |||||||| || ||| || |
Sbjct 6229 AACGAGCTCATCTCGCGTGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTTT-- 6286
Query 46321 ACTCGCGT-GCACGACAAGCTTGCGCCCGACACCGTGCTGA--GCATGTTCAAGGAGGCG 46377
||| | | | ||| | | ||| | || || | || |||| || || ||
Sbjct 6287 -CTCACCTCGAACGTCGTCC---CGCTCCTCATCGCGTTGCACGCATCATCGCCGAAGCC 6342
Query 46378 GTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC 46437
|| | || ||||||||||| || || | ||||||||||| ||| || | || ||||||
Sbjct 6343 GTCGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCCTTGATCGGTATGAAC 6402
Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT 46487
| || |||||| | |||||||||||||| |||||||| ||||||||
Sbjct 6403 TCGACGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGCTGCTCGT 6452
>seq893
Length=83276
Score = 91.5 bits (100), Expect = 1e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
|||||||||||| || |||||||| || | |||||| |||||| |||||||||||
Sbjct 39248 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 39189
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141
|| |||| | |||||||||||| || ||||| || || |||||
Sbjct 39188 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 39144
>seq236
Length=10160
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || | || | ||||||||||||||| |||||||||||
Sbjct 10032 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAG 10091
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| ||||||||||| || |||| | ||||||||||| || |||
Sbjct 10092 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGG 10151
Query 131128 ATTCCTTC 131135
|| || ||
Sbjct 10152 ATGCCCTC 10159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472006699234560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |