Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq220 105 8e-18 seq93 91.5 2e-13 >seq220 Length=39508 Score = 105 bits (116), Expect = 8e-18 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 137906 TCAGCTCGGCAATGGCCTCGTACGACTGCGGCACGTGAATGTTCATCTCGTCGCCGTCAA 137965 ||| |||||| || ||| | ||||||||||||||| | |||||||||||||||||||| Sbjct 958 TCAACTCGGCGCGGGTCTCTTCCGACTGCGGCACGTGCAAGTTCATCTCGTCGCCGTCAA 899 Query 137966 AGTCGCAGTTGAAGGGCTTCGTTATGGCCAGGTTGATTTTGAGCGTCTTGACTGGTTTGA 138025 ||||| |||| | ||| ||| | | || ||||| || ||| | || ||| Sbjct 898 AGTCGGCGTTGTACGGCGACGTGACCGACAAGTTGAGCCGGAAGGTCGAGTACGGCATGA 839 Query 138026 ---TGACCACCTTAAAGGCCATCATGGACGCCTTGTGCAGCGTCGGTTGCCGGTTGAGCA 138082 |||| | |||||||| ||| ||||||||||| |||||||||||||| || Sbjct 838 GCTTGACGCGGT---GCGCCATCATCGACATCTTGTGCAGCGACGGTTGCCGGTTGAACA 782 Query 138083 GCACGTAGTCGCCGTCCATCAGCTGCCG 138110 || |||||||||| | || || || Sbjct 781 AGACAATGTCGCCGTCCTTGAGGTGGCG 754 >seq93 Length=41911 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15044 CGCACGCCCGAGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGC 15103 |||| ||||||||||||||||||||| ||| | | || ||||| ||| ||| Sbjct 3486 CGCATTCCCGAGATTGGCGACAAGTTTGCGTCTCGACACGGTCAGAAGGGAACGATCGGT 3545 Query 15104 ATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATC 15163 || | | || || || |||||||| ||| | || ||||| ||||||||| | ||| Sbjct 3546 ATCACGTACCGTCACGAGGACATGCCGTTTTCGGCCGAGGGCATCACGCCCGACTTGATC 3605 Query 15164 ATCAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||||||| || ||| ||||| |||||||| || Sbjct 3606 ATCAACCCGCACGCCATTCCGTCGCGCATGACGAT 3640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611384097758400