Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq220 105 8e-18
seq93 91.5 2e-13
>seq220
Length=39508
Score = 105 bits (116), Expect = 8e-18
Identities = 149/208 (72%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 137906 TCAGCTCGGCAATGGCCTCGTACGACTGCGGCACGTGAATGTTCATCTCGTCGCCGTCAA 137965
||| |||||| || ||| | ||||||||||||||| | ||||||||||||||||||||
Sbjct 958 TCAACTCGGCGCGGGTCTCTTCCGACTGCGGCACGTGCAAGTTCATCTCGTCGCCGTCAA 899
Query 137966 AGTCGCAGTTGAAGGGCTTCGTTATGGCCAGGTTGATTTTGAGCGTCTTGACTGGTTTGA 138025
||||| |||| | ||| ||| | | || ||||| || ||| | || |||
Sbjct 898 AGTCGGCGTTGTACGGCGACGTGACCGACAAGTTGAGCCGGAAGGTCGAGTACGGCATGA 839
Query 138026 ---TGACCACCTTAAAGGCCATCATGGACGCCTTGTGCAGCGTCGGTTGCCGGTTGAGCA 138082
|||| | |||||||| ||| ||||||||||| |||||||||||||| ||
Sbjct 838 GCTTGACGCGGT---GCGCCATCATCGACATCTTGTGCAGCGACGGTTGCCGGTTGAACA 782
Query 138083 GCACGTAGTCGCCGTCCATCAGCTGCCG 138110
|| |||||||||| | || || ||
Sbjct 781 AGACAATGTCGCCGTCCTTGAGGTGGCG 754
>seq93
Length=41911
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 15044 CGCACGCCCGAGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGC 15103
|||| ||||||||||||||||||||| ||| | | || ||||| ||| |||
Sbjct 3486 CGCATTCCCGAGATTGGCGACAAGTTTGCGTCTCGACACGGTCAGAAGGGAACGATCGGT 3545
Query 15104 ATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATC 15163
|| | | || || || |||||||| ||| | || ||||| ||||||||| | |||
Sbjct 3546 ATCACGTACCGTCACGAGGACATGCCGTTTTCGGCCGAGGGCATCACGCCCGACTTGATC 3605
Query 15164 ATCAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198
|||||||| || ||| ||||| |||||||| ||
Sbjct 3606 ATCAACCCGCACGCCATTCCGTCGCGCATGACGAT 3640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611384097758400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |