Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq381 123 2e-23
seq544 98.7 8e-16
seq893 93.3 4e-14
seq236 86.0 5e-12
>seq381
Length=90481
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || ||||| ||| |||| || || || || || |
Sbjct 282 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCCTCG 223
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || || || ||||||||||| || || ||||| ||
Sbjct 222 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 163
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||||||||| ||| | ||||| ||||||| |||| |||||||||
Sbjct 162 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 103
Query 22399 ATTCAAAAAGAATCCACC 22416
|| ||||| || || |||
Sbjct 102 ATCCAAAAGGAGTCGACC 85
>seq544
Length=109881
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || ||| |||| || || || || | |||| || | ||| | ||||
Sbjct 82793 ACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCC 82734
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || ||||| || || ||||| || |||||||||||
Sbjct 82733 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAG 82674
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| |||||| | || || |||||||| || || || || ||| | ||
Sbjct 82673 CAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 82614
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || | || |||||||| |||
Sbjct 82613 CTCGTCCTCCGCTTGCGCGGTGGT 82590
>seq893
Length=83276
Score = 93.3 bits (102), Expect = 4e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || ||||| || || ||||| || |||||||||||
Sbjct 39135 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAG 39194
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | ||||| ||||||| |||| || |||||||| || || || || |||
Sbjct 39195 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 39248
>seq236
Length=10160
Score = 86.0 bits (94), Expect = 5e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 22317 GGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCA 22376
|||||| || || ||||| || || || || || ||||||||||| ||| | |||||
Sbjct 10160 GGAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGG 10101
Query 22377 CCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||||||| |||| ||||||||||| ||||| || || |||
Sbjct 10100 CCGCACCCTCTCGGATTACAACATCCAAAAGGAGTCGACC 10061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419722710640210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |