Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq784 114 3e-20 seq392 114 3e-20 seq350 114 3e-20 seq544 113 9e-20 seq196 111 3e-19 seq243 102 2e-16 seq371 100 6e-16 >seq784 Length=23321 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 20774 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 20715 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 20714 CCCCACATTGGGC 20702 >seq392 Length=45290 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 23121 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 23180 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 23181 CCCCACATTGGGC 23193 >seq350 Length=83028 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 27254 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 27313 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 27314 CCCCACATTGGGC 27326 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 38672 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 38613 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 38612 CCCCACATTGGGC 38600 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 40545 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 40604 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 40605 CCCCACATTGGGC 40617 >seq544 Length=109881 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| Sbjct 40442 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 40383 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 40382 CCCACATTGGGC 40371 >seq196 Length=52735 Score = 111 bits (122), Expect = 3e-19 Identities = 120/158 (76%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | |||||||| ||||| || ||||| || || ||||| |||| || |||||| Sbjct 46144 GGTATCGTCGGACCCAACGGTGCCGGAAAGTCGACGCTCATCAAGCTCCTCACCGGCGAG 46085 Query 280230 ACCCA---GGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 |||| || ||| ||| ||| |||||| || ||| |||| || || |||||| Sbjct 46084 ACCCTCCCGGACAC---GGGCCGCGTCGAGAAGCACCCGAACTTGCGTATCGCCTACGTC 46028 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGA 280324 || |||||||| ||||||||||||||| | ||||| || Sbjct 46027 GCGCAGCACGCGTTCCACCACATCGAGCAGCACCTCGA 45990 >seq243 Length=9243 Score = 102 bits (112), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||||||| ||||| | ||||| |||||||| ||||| || Sbjct 378 TCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGGTC 319 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | ||| || || |||| | ||||| || |||||||| | Sbjct 318 GCCTTGTAAATCTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGATG 259 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 ||||| | ||| || || ||||||||||| |||| Sbjct 258 TACTGGCACATGAGGTCCGAGTTCATGCCGATCA 225 >seq371 Length=25657 Score = 100 bits (110), Expect = 6e-16 Identities = 158/225 (70%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || |||||||| |||||||||||||| || ||| | |||||||| || | Sbjct 15859 GGTTCGCTCTCGGGTGGATGGAAGATGAAGCTCGCGCTCGCGCGCGCCATCCTGTTCGAG 15918 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || || || ||||| ||||||||| ||||| ||||| |||||| Sbjct 15919 GCCGACATTCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTGAACGTCGCCTGG 15978 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| | || |||| | || |||| ||||| |||||||| Sbjct 15979 CTCGAAAACTACCTCTGCTCGCTCAAGACCTGCACGTCGATCATCGTCTCGCACGACTCG 16038 Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAA 279923 |||||||| | ||| ||| | | |||| | |||| ||| ||| Sbjct 16039 GGCTTCCTGAACAACGTCTGCACCGACATCCTCCACT-TGAACAA 16082 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/164 (73%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | ||||| || ||| |||| ||||| || || |||| |||| ||||||| Sbjct 16502 GTCCTCGGACCGAACGGTTCGGGCAAGTCGACGCTCGTCAAGCTCCTCGTCAACGAGACC 16561 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || | | |||| || | | |||||||| |||||| || || | ||||||||| Sbjct 16562 GAGCCGAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCG 16621 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 |||||||| |||||||||||||| ||||||| |||| ||| || Sbjct 16622 CAGCACGCGTTCCACCACATCGACCACCACCTCGACAAGACCCC 16665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027823183089594