Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq784 114 3e-20
seq392 114 3e-20
seq350 114 3e-20
seq544 113 9e-20
seq196 111 3e-19
seq243 102 2e-16
seq371 100 6e-16
>seq784
Length=23321
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 20774 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 20715
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 20714 CCCCACATTGGGC 20702
>seq392
Length=45290
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 23121 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 23180
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 23181 CCCCACATTGGGC 23193
>seq350
Length=83028
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 27254 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 27313
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 27314 CCCCACATTGGGC 27326
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 38672 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 38613
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 38612 CCCCACATTGGGC 38600
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 40545 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 40604
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 40605 CCCCACATTGGGC 40617
>seq544
Length=109881
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 40442 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 40383
Query 142564 CCCACATCGGGC 142575
||||||| ||||
Sbjct 40382 CCCACATTGGGC 40371
>seq196
Length=52735
Score = 111 bits (122), Expect = 3e-19
Identities = 120/158 (76%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
||| || | |||||||| ||||| || ||||| || || ||||| |||| || ||||||
Sbjct 46144 GGTATCGTCGGACCCAACGGTGCCGGAAAGTCGACGCTCATCAAGCTCCTCACCGGCGAG 46085
Query 280230 ACCCA---GGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286
|||| || ||| ||| ||| |||||| || ||| |||| || || ||||||
Sbjct 46084 ACCCTCCCGGACAC---GGGCCGCGTCGAGAAGCACCCGAACTTGCGTATCGCCTACGTC 46028
Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGA 280324
|| |||||||| ||||||||||||||| | ||||| ||
Sbjct 46027 GCGCAGCACGCGTTCCACCACATCGAGCAGCACCTCGA 45990
>seq243
Length=9243
Score = 102 bits (112), Expect = 2e-16
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | ||||||||||| ||||| | ||||| |||||||| ||||| ||
Sbjct 378 TCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGGTC 319
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| ||| | ||| || || |||| | ||||| || |||||||| |
Sbjct 318 GCCTTGTAAATCTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGATG 259
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716
||||| | ||| || || ||||||||||| ||||
Sbjct 258 TACTGGCACATGAGGTCCGAGTTCATGCCGATCA 225
>seq371
Length=25657
Score = 100 bits (110), Expect = 6e-16
Identities = 158/225 (70%), Gaps = 1/225 (0%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
||||| || |||||||| |||||||||||||| || ||| | |||||||| || |
Sbjct 15859 GGTTCGCTCTCGGGTGGATGGAAGATGAAGCTCGCGCTCGCGCGCGCCATCCTGTTCGAG 15918
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
||||| | || || || || ||||| ||||||||| ||||| ||||| ||||||
Sbjct 15919 GCCGACATTCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTGAACGTCGCCTGG 15978
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| | |||||| | || |||| | || |||| ||||| ||||||||
Sbjct 15979 CTCGAAAACTACCTCTGCTCGCTCAAGACCTGCACGTCGATCATCGTCTCGCACGACTCG 16038
Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAA 279923
|||||||| | ||| ||| | | |||| | |||| ||| |||
Sbjct 16039 GGCTTCCTGAACAACGTCTGCACCGACATCCTCCACT-TGAACAA 16082
Score = 91.5 bits (100), Expect = 3e-13
Identities = 120/164 (73%), Gaps = 3/164 (2%)
Strand=Plus/Plus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
||| | ||||| || ||| |||| ||||| || || |||| |||| |||||||
Sbjct 16502 GTCCTCGGACCGAACGGTTCGGGCAAGTCGACGCTCGTCAAGCTCCTCGTCAACGAGACC 16561
Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
|| | | |||| || | | |||||||| |||||| || || | |||||||||
Sbjct 16562 GAGCCGAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCG 16621
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333
|||||||| |||||||||||||| ||||||| |||| ||| ||
Sbjct 16622 CAGCACGCGTTCCACCACATCGACCACCACCTCGACAAGACCCC 16665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027823183089594
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |