Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq381 158 2e-33 seq243 120 6e-22 seq196 116 7e-21 seq64 114 2e-20 seq371 113 8e-20 seq784 98.7 2e-15 seq544 98.7 2e-15 seq392 98.7 2e-15 seq350 98.7 2e-15 seq236 95.1 2e-14 >seq381 Length=90481 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| ||||||||||| ||||| ||| Sbjct 56 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAG 115 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || ||||| | || |||||||| || Sbjct 116 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGG 175 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||| ||||| | || || || Sbjct 176 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 235 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||||| ||||||||||| || || ||||| Sbjct 236 TCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 282 >seq243 Length=9243 Score = 120 bits (132), Expect = 6e-22 Identities = 220/317 (69%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 9971 CTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTC-T 10029 |||||||||||||| ||||||||| | || || | ||||| ||||| || ||||| | Sbjct 379 CTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGGT 320 Query 10030 CGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGA 10089 || | || | ||| || ||||| || || | ||||| || || ||||||| Sbjct 319 CGCCTTGTAAAT-CTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGA 261 Query 10090 TGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAA 10148 ||||||||| ||| ||||||||||||||||| |||| || | |||| | |||||| Sbjct 260 TGTACTGGCACATGAGGTCCGAGTTCATGCCGATCA-GCTTGACGGGAAGCGCGTCGGTC 202 Query 10149 ATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGAC 10208 | ||| || | ||| | |||||||| || || ||||| || ||| ||| || | Sbjct 201 AGGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCGACCGTGTCGGGGTGC 142 Query 10209 AGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCG 10268 | | ||||| | ||| | ||||| |||| | |||||| ||||||||| Sbjct 141 GGTCGGCGTTCGAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCG 82 Query 10269 CGGCTGATGAACTCGTT 10285 || ||||| |||||| Sbjct 81 CGCGAGATGAGCTCGTT 65 >seq196 Length=52735 Score = 116 bits (128), Expect = 7e-21 Identities = 439/670 (66%), Gaps = 28/670 (4%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||| ||||||||| || | | | || ||||| | ||| || |||||||| Sbjct 45957 TAACGCCACATGATGTACTGCACGGCTGACTTTTCGAGGTGCTGCTCGATGTGGTGGAAC 46016 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| || ||||| || || |||| ||| || |||||| || | | |||| ||| Sbjct 46017 GCGTGCTGCGCGACGTAGGCGATACGCAAGTTCGGGTGCTTCTCGAC-GCGGCCCGTGTC 46075 Query 225098 -GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156 || | | |||||||||||||| |||||||||||| | ||| || ||||| ||||| || Sbjct 46076 CGGGAGGGTCTCGCCGGTGAGGAGCTTGATGAGCGTCGACTTTCCGGCACCGTTGGGTCC 46135 Query 225157 AATCACGCCAATCCGGGATGACATTGCAAC-CTGCGAGTTCACGTT-----GCTGAAG-A 225209 | | || | ||||| || | | || | || || | |||| |||| | Sbjct 46136 GACGATACCGACGCGGGAGGAGAGCGAGACACCGC-AGGTGGCGTTGTAGAGCTGCGGCT 46194 Query 225210 TCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACG-GTCC 225268 | | | ||| | |||| | |||| | | || ||| | ||| ||||| |||| Sbjct 46195 TGGCGGCGCCGG---GGTAGGTGAAGGTGCAGTCGGTCATCTTGAGGATCGCACGAGTCC 46251 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 | | | | || | ||||| ||| || ||||| ||||| || ||||| Sbjct 46252 GCGAACGGACGCCCATGAGCGAACCGGGGGTC-GGGAAGGTGAACTTGACGACGTCGTCC 46310 Query 225329 TTCAGGTCGTAGTAAGATGCAGCC--TCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386 || |||||| | | | ||| ||||| ||| | || || | | ||||| | Sbjct 46311 GAGAGAGTGTAGTACG-TCCGGCCGGGCGGGT-ACTTCTCGACAAAGTCGGCGAGGTTAC 46368 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAA--TTGCCGAGCACACTGC 225444 || ||| | ||||| | ||||| | ||| |||| | |||| ||| || || Sbjct 46369 CGCGGTAGTAGACGAGCT---GCTTCTTGTGGTAGTGAATGATGTTGC--TGCAGACGGC 46423 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| |||||||| |||||||| || | || || |||| || | | || | |||||| Sbjct 46424 GTCGAGGAAGCCCGAGTCGTGCGAGATGATCATCGACGTGACCTCCTTCTGCGACTTGAG 46483 Query 225505 GTGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 || || || | ||| || ||| |||||||| |||||| || || ||||| || | Sbjct 46484 GT-AGTCTTGCAACCACGCGACGGACTGGACGTCCAAGTGGTTAGTCGGCTCGTCGAGGA 46542 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 | || | ||| | | ||||| |||||||| ||| | | ||| |||||||| | Sbjct 46543 GGAGCAGGTCGACCTTCATGAGCATGGCGCGGCAGAGTGCGACGCGCATCTTCCAGCCTC 46602 Query 225624 CGGACAGGGA 225633 |||| || || Sbjct 46603 CGGAGAGCGA 46612 >seq64 Length=12022 Score = 114 bits (126), Expect = 2e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 9971 CTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 |||||||||||||| ||| ||||| | || || |||||||| | || || |||||||| Sbjct 6543 CTCGAAGAAGTTGGTCTTTCCCTCCATCGAGATCAGCTCCATCCAATCGAAAGGGTTCTC 6484 Query 10031 GGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGAT 10090 | | | ||||| || ||||| || || | ||||| ||||| |||||||| Sbjct 6483 CGTGTTGTAGAGCTTGTCGTTCCCGAGCGCGACGAGCAGCCGGTCCGCCACAAACTCGAT 6424 Query 10091 GTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAAT 10150 |||||||| ||||| ||||||||| || |||| | | ||| | |||||| | Sbjct 6423 GTACTGGCACATCAACGTCGAGTTCATACCGATCAAGGCGACGGGCAGTGCGTCGGTCAA 6364 Query 10151 GAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGC 10188 ||| ||||| ||| | |||| ||||| ||| ||||| Sbjct 6363 GAACTCCTTCTCGATCTCGACGGCTTCGGCGATGATGC 6326 >seq371 Length=25657 Score = 113 bits (124), Expect = 8e-20 Identities = 367/561 (65%), Gaps = 32/561 (6%) Strand=Plus/Minus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 |||||||| |||||||| || || ||||| |||| | || | || ||||| Sbjct 16046 AGGAAGCCCGAGTCGTGCGAGACGATGATCGACGTGCAGGTCTTGAGCGAGCAGAGGTAG 15987 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | |||||| || ||||| ||||||| |||||| || || ||||| || || || Sbjct 15986 TTTTCGAGCCAGGCGACGTTCAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGA 15927 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || || | ||||||||||||| ||| | |||||||| ||||| || || || Sbjct 15926 ATGTCGGCCTCGAACAGGATGGCGCGCGCGAGCGCGAGCTTCATCTTCCATCCACCCGAG 15867 Query 225629 AGGGAGCCGATTGAAACAGAGTGCT-TAGCT---TCGTCAAAGCCG---TACTCCAGGAG 225681 || || ||||| | | | | || ||| ||| ||||||| |||| || | Sbjct 15866 AGCGAACCGATCG---CGGCCTCCTGGCGCTCGCGCGT-AAAGCCGACCGACTCGAGAAC 15811 Query 225682 CGTCTGGATAATGCGCTCGG----GAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGA 225737 || |||| ||||| |||| | || | | ||| || || |||||| Sbjct 15810 GGTGCGGATCTCCTCCTCGGTCTTGAGA-ATACGCTTG---TCCTTGAGGACGAACGAGA 15755 Query 225738 GGTAATC--ATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACAC 225795 | ||| | ||||| ||| || |||| | |||||| || ||||| | Sbjct 15754 CG--ATCGAGTTCTCGGTCTCGTC----AC-----CGTCGACGTCGTGCTCGACGTAGAA 15706 Query 225796 CGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAG 225855 || |||| || | ||||||||||| | ||| || || | ||||| || | Sbjct 15705 GGTGCGGACCTCGTCCGGGGACGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCAT 15646 Query 225856 CAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGAT 225915 ||||| |||||| | |||||| | || ||| |||||| | | || ||||||| Sbjct 15645 GAGGGTCGACTTGCCGGAACCGTTGCGGCCACAGAGACCGTAACGGTGACCACGCTTGAG 15586 Query 225916 GTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATC 225975 ||| || | ||| || ||||||||| | || ||||| || ||||| ||| | Sbjct 15585 ACGGAGCGTCGCAGTGTTGAGCAGGATCTTGGCGCCGTAGGCGAGCGAGAAGGTGCAGTT 15526 Query 225976 GCACAGGTCCTCACCCTCCTC 225996 |||||||||||| |||||||| Sbjct 15525 GCACAGGTCCTCGCCCTCCTC 15505 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 ||||| | |||||||||||||| ||| |||| |||||||| || ||||||| | ||| Sbjct 17365 AGCGCAGCGAGCGACTCGCGGTCGAGGTAGTTGGTCGGCTCGTCGAGGATGACGATGTGA 17306 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 || | |||| || || | | || | ||| ||||||||||| || ||||| ||| Sbjct 17305 GGCCGGCGCCAGGTCGCGGCGGCGAGGACGACCTTGACCTTCTGACCACCGGAGAGACCG 17246 Query 224618 CGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAATCTTGGCCATATGGTCCTCG 224677 || ||| ||| || ||||| || || || || || | | || | ||| | |||| Sbjct 17245 CGCATCGTGTTGTGCGTAGTGAACTCCGGCTCGAGGCCGAAGTCGGAGAAATGTTGCTCG 17186 Query 224678 ATGTTCTT 224685 || | ||| Sbjct 17185 ATCTCCTT 17178 >seq784 Length=23321 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 20773 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 20714 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 20713 CCCACATTGGGC 20702 >seq544 Length=109881 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 40442 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 40383 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 40382 CCCACATTGGGC 40371 >seq392 Length=45290 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 23122 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 23181 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 23182 CCCACATTGGGC 23193 >seq350 Length=83028 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 27255 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 27314 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 27315 CCCACATTGGGC 27326 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 38671 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 38612 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 38611 CCCACATTGGGC 38600 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 40546 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 40605 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 40606 CCCACATTGGGC 40617 >seq236 Length=10160 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || |||||||| | || | ||| || || ||||| ||||||||||| ||||| || Sbjct 10031 TCCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGA 10090 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || || || | |||||| ||||| || ||||| | || |||||||| || Sbjct 10091 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGG 10150 Query 68354 AATGCCTTCC 68363 ||||| ||| Sbjct 10151 GATGCCCTCC 10160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921610488030480