Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq381 158 2e-33
seq243 120 6e-22
seq196 116 7e-21
seq64 114 2e-20
seq371 113 8e-20
seq784 98.7 2e-15
seq544 98.7 2e-15
seq392 98.7 2e-15
seq350 98.7 2e-15
seq236 95.1 2e-14
>seq381
Length=90481
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || ||||| ||||||||||| ||||| |||
Sbjct 56 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAG 115
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| ||||| || ||||| | || |||||||| ||
Sbjct 116 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGG 175
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| ||||||||| ||||| ||||| | || || ||
Sbjct 176 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 235
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || || ||||| ||||||||||| || || |||||
Sbjct 236 TCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 282
>seq243
Length=9243
Score = 120 bits (132), Expect = 6e-22
Identities = 220/317 (69%), Gaps = 4/317 (1%)
Strand=Plus/Minus
Query 9971 CTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTC-T 10029
|||||||||||||| ||||||||| | || || | ||||| ||||| || ||||| |
Sbjct 379 CTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGGT 320
Query 10030 CGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGA 10089
|| | || | ||| || ||||| || || | ||||| || || |||||||
Sbjct 319 CGCCTTGTAAAT-CTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGA 261
Query 10090 TGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAA 10148
||||||||| ||| ||||||||||||||||| |||| || | |||| | ||||||
Sbjct 260 TGTACTGGCACATGAGGTCCGAGTTCATGCCGATCA-GCTTGACGGGAAGCGCGTCGGTC 202
Query 10149 ATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGAC 10208
| ||| || | ||| | |||||||| || || ||||| || ||| ||| || |
Sbjct 201 AGGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCGACCGTGTCGGGGTGC 142
Query 10209 AGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCG 10268
| | ||||| | ||| | ||||| |||| | |||||| |||||||||
Sbjct 141 GGTCGGCGTTCGAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCG 82
Query 10269 CGGCTGATGAACTCGTT 10285
|| ||||| ||||||
Sbjct 81 CGCGAGATGAGCTCGTT 65
>seq196
Length=52735
Score = 116 bits (128), Expect = 7e-21
Identities = 439/670 (66%), Gaps = 28/670 (4%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||| ||||||||| || | | | || ||||| | ||| || ||||||||
Sbjct 45957 TAACGCCACATGATGTACTGCACGGCTGACTTTTCGAGGTGCTGCTCGATGTGGTGGAAC 46016
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| ||||| || ||||| || || |||| ||| || |||||| || | | |||| |||
Sbjct 46017 GCGTGCTGCGCGACGTAGGCGATACGCAAGTTCGGGTGCTTCTCGAC-GCGGCCCGTGTC 46075
Query 225098 -GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156
|| | | |||||||||||||| |||||||||||| | ||| || ||||| ||||| ||
Sbjct 46076 CGGGAGGGTCTCGCCGGTGAGGAGCTTGATGAGCGTCGACTTTCCGGCACCGTTGGGTCC 46135
Query 225157 AATCACGCCAATCCGGGATGACATTGCAAC-CTGCGAGTTCACGTT-----GCTGAAG-A 225209
| | || | ||||| || | | || | || || | |||| |||| |
Sbjct 46136 GACGATACCGACGCGGGAGGAGAGCGAGACACCGC-AGGTGGCGTTGTAGAGCTGCGGCT 46194
Query 225210 TCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACG-GTCC 225268
| | | ||| | |||| | |||| | | || ||| | ||| ||||| ||||
Sbjct 46195 TGGCGGCGCCGG---GGTAGGTGAAGGTGCAGTCGGTCATCTTGAGGATCGCACGAGTCC 46251
Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328
| | | | || | ||||| ||| || ||||| ||||| || |||||
Sbjct 46252 GCGAACGGACGCCCATGAGCGAACCGGGGGTC-GGGAAGGTGAACTTGACGACGTCGTCC 46310
Query 225329 TTCAGGTCGTAGTAAGATGCAGCC--TCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386
|| |||||| | | | ||| ||||| ||| | || || | | ||||| |
Sbjct 46311 GAGAGAGTGTAGTACG-TCCGGCCGGGCGGGT-ACTTCTCGACAAAGTCGGCGAGGTTAC 46368
Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAA--TTGCCGAGCACACTGC 225444
|| ||| | ||||| | ||||| | ||| |||| | |||| ||| || ||
Sbjct 46369 CGCGGTAGTAGACGAGCT---GCTTCTTGTGGTAGTGAATGATGTTGC--TGCAGACGGC 46423
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| |||||||| |||||||| || | || || |||| || | | || | ||||||
Sbjct 46424 GTCGAGGAAGCCCGAGTCGTGCGAGATGATCATCGACGTGACCTCCTTCTGCGACTTGAG 46483
Query 225505 GTGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563
|| || || | ||| || ||| |||||||| |||||| || || ||||| || |
Sbjct 46484 GT-AGTCTTGCAACCACGCGACGGACTGGACGTCCAAGTGGTTAGTCGGCTCGTCGAGGA 46542
Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623
| || | ||| | | ||||| |||||||| ||| | | ||| |||||||| |
Sbjct 46543 GGAGCAGGTCGACCTTCATGAGCATGGCGCGGCAGAGTGCGACGCGCATCTTCCAGCCTC 46602
Query 225624 CGGACAGGGA 225633
|||| || ||
Sbjct 46603 CGGAGAGCGA 46612
>seq64
Length=12022
Score = 114 bits (126), Expect = 2e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 9971 CTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030
|||||||||||||| ||| ||||| | || || |||||||| | || || ||||||||
Sbjct 6543 CTCGAAGAAGTTGGTCTTTCCCTCCATCGAGATCAGCTCCATCCAATCGAAAGGGTTCTC 6484
Query 10031 GGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGAT 10090
| | | ||||| || ||||| || || | ||||| ||||| ||||||||
Sbjct 6483 CGTGTTGTAGAGCTTGTCGTTCCCGAGCGCGACGAGCAGCCGGTCCGCCACAAACTCGAT 6424
Query 10091 GTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAAT 10150
|||||||| ||||| ||||||||| || |||| | | ||| | |||||| |
Sbjct 6423 GTACTGGCACATCAACGTCGAGTTCATACCGATCAAGGCGACGGGCAGTGCGTCGGTCAA 6364
Query 10151 GAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGC 10188
||| ||||| ||| | |||| ||||| ||| |||||
Sbjct 6363 GAACTCCTTCTCGATCTCGACGGCTTCGGCGATGATGC 6326
>seq371
Length=25657
Score = 113 bits (124), Expect = 8e-20
Identities = 367/561 (65%), Gaps = 32/561 (6%)
Strand=Plus/Minus
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508
|||||||| |||||||| || || ||||| |||| | || | || |||||
Sbjct 16046 AGGAAGCCCGAGTCGTGCGAGACGATGATCGACGTGCAGGTCTTGAGCGAGCAGAGGTAG 15987
Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568
| |||||| || ||||| ||||||| |||||| || || ||||| || || ||
Sbjct 15986 TTTTCGAGCCAGGCGACGTTCAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGA 15927
Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628
||||| || || | ||||||||||||| ||| | |||||||| ||||| || || ||
Sbjct 15926 ATGTCGGCCTCGAACAGGATGGCGCGCGCGAGCGCGAGCTTCATCTTCCATCCACCCGAG 15867
Query 225629 AGGGAGCCGATTGAAACAGAGTGCT-TAGCT---TCGTCAAAGCCG---TACTCCAGGAG 225681
|| || ||||| | | | | || ||| ||| ||||||| |||| || |
Sbjct 15866 AGCGAACCGATCG---CGGCCTCCTGGCGCTCGCGCGT-AAAGCCGACCGACTCGAGAAC 15811
Query 225682 CGTCTGGATAATGCGCTCGG----GAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGA 225737
|| |||| ||||| |||| | || | | ||| || || ||||||
Sbjct 15810 GGTGCGGATCTCCTCCTCGGTCTTGAGA-ATACGCTTG---TCCTTGAGGACGAACGAGA 15755
Query 225738 GGTAATC--ATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACAC 225795
| ||| | ||||| ||| || |||| | |||||| || ||||| |
Sbjct 15754 CG--ATCGAGTTCTCGGTCTCGTC----AC-----CGTCGACGTCGTGCTCGACGTAGAA 15706
Query 225796 CGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAG 225855
|| |||| || | ||||||||||| | ||| || || | ||||| || |
Sbjct 15705 GGTGCGGACCTCGTCCGGGGACGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCAT 15646
Query 225856 CAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGAT 225915
||||| |||||| | |||||| | || ||| |||||| | | || |||||||
Sbjct 15645 GAGGGTCGACTTGCCGGAACCGTTGCGGCCACAGAGACCGTAACGGTGACCACGCTTGAG 15586
Query 225916 GTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATC 225975
||| || | ||| || ||||||||| | || ||||| || ||||| ||| |
Sbjct 15585 ACGGAGCGTCGCAGTGTTGAGCAGGATCTTGGCGCCGTAGGCGAGCGAGAAGGTGCAGTT 15526
Query 225976 GCACAGGTCCTCACCCTCCTC 225996
|||||||||||| ||||||||
Sbjct 15525 GCACAGGTCCTCGCCCTCCTC 15505
Score = 87.8 bits (96), Expect = 3e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557
||||| | |||||||||||||| ||| |||| |||||||| || ||||||| | |||
Sbjct 17365 AGCGCAGCGAGCGACTCGCGGTCGAGGTAGTTGGTCGGCTCGTCGAGGATGACGATGTGA 17306
Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617
|| | |||| || || | | || | ||| ||||||||||| || ||||| |||
Sbjct 17305 GGCCGGCGCCAGGTCGCGGCGGCGAGGACGACCTTGACCTTCTGACCACCGGAGAGACCG 17246
Query 224618 CGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAATCTTGGCCATATGGTCCTCG 224677
|| ||| ||| || ||||| || || || || || | | || | ||| | ||||
Sbjct 17245 CGCATCGTGTTGTGCGTAGTGAACTCCGGCTCGAGGCCGAAGTCGGAGAAATGTTGCTCG 17186
Query 224678 ATGTTCTT 224685
|| | |||
Sbjct 17185 ATCTCCTT 17178
>seq784
Length=23321
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 20773 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 20714
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 20713 CCCACATTGGGC 20702
>seq544
Length=109881
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 40442 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 40383
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 40382 CCCACATTGGGC 40371
>seq392
Length=45290
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 23122 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 23181
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 23182 CCCACATTGGGC 23193
>seq350
Length=83028
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 27255 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 27314
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 27315 CCCACATTGGGC 27326
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 38671 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 38612
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 38611 CCCACATTGGGC 38600
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 40546 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 40605
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 40606 CCCACATTGGGC 40617
>seq236
Length=10160
Score = 95.1 bits (104), Expect = 2e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || |||||||| | || | ||| || || ||||| ||||||||||| ||||| ||
Sbjct 10031 TCCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGA 10090
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||| || | || || || | |||||| ||||| || ||||| | || |||||||| ||
Sbjct 10091 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGG 10150
Query 68354 AATGCCTTCC 68363
||||| |||
Sbjct 10151 GATGCCCTCC 10160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921610488030480
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