Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq985 250 5e-61 seq243 145 1e-29 seq100 136 7e-27 seq64 123 5e-23 >seq985 Length=76026 Score = 250 bits (276), Expect = 5e-61 Identities = 550/814 (68%), Gaps = 18/814 (2%) Strand=Plus/Plus Query 244791 CGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850 ||||| |||||||||||||||||||||||| || ||||| | |||||| |||| | Sbjct 18334 CGTTGGCGGCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAA 18393 Query 244851 CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAG 244909 | || ||| || | | ||| || ||| | || | | | ||||| |||||| Sbjct 18394 TGGCGTACCACAGCTTCTGCGCCGAGATCGTGC-GCTTGGCGCGACCCTCCTTCTCGTAC 18452 Query 244910 CGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCC 244969 | | || ||| ||||||| ||| ||||||||| |||||||| | | || | Sbjct 18453 TTCTCGAAAAGCGCCCTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGG-CGCTTCGGC 18511 Query 244970 GGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGAT 245028 ||| || | || ||||||| || | || ||| | | |||||||||||||||||| Sbjct 18512 GGGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGAT 18571 Query 245029 CCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAG 245088 ||| || || ||||||||| | | | || || ||| |||||| | || Sbjct 18572 CCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAG 18631 Query 245089 CTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 || | ||||| |||| ||| ||||||| ||||| | ||||| |||| |||||||| Sbjct 18632 GTCGAGGAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGG 18691 Query 245149 CCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGG 245208 ||||| |||||||| |||||||| | | | |||||||| ||| || |||| Sbjct 18692 TCGCTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGG 18751 Query 245209 CACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTT 245268 ||| |||||||| |||| |||||| |||||| |||||| | || | | | || ||| Sbjct 18752 CACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGGATGTT 18811 Query 245269 GCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGT 245328 | || || | || | ||||| || |||||||||||| ||||| |||||| || Sbjct 18812 GTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGT 18871 Query 245329 GTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG 245388 ||| ||||| || || ||| || |||| ||| || |||||||| || || || Sbjct 18872 GTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTG 18931 Query 245389 GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 || | |||| | | | ||||||||| ||||| ||||| || |||||||| ||| Sbjct 18932 CGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGA 18991 Query 245449 GAGGAACCCGTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGC 245507 | || ||| |||| || || || | ||||| | |||||||| | ||| Sbjct 18992 CATCAAGTTGTAGGTCTCGA-TAGCACGCTTGATGTCGGGTCCGTGGATGCCGACGGCAA 19050 Query 245508 ACCTCATGAGGGTGTGCTGGGG------CGTCTCGATGGGTCCCTCGGGTCCCTTGAGCA 245561 | |||||| ||||||| || || | | || || || | ||| |||| Sbjct 19051 CGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTG---CCGTC-GATCC--GCAGCA 19104 Query 245562 TGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 ||| ||||||||||| || ||||| || ||||| Sbjct 19105 GGTACGAGCGCTCGAGAGTTTTGAAACCGAAGTA 19138 >seq243 Length=9243 Score = 145 bits (160), Expect = 1e-29 Identities = 228/322 (71%), Gaps = 7/322 (2%) Strand=Plus/Plus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | |||||||| || || | ||||||||||||||||| ||||| Sbjct 64 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 123 Query 42866 GAGCCACCTC--AGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCC 42923 | |||||| | || | | | | | | ||| || | ||||||| ||||| Sbjct 124 G---CACCTCGAACGC-CGACCGCACCCCGACACGG-TCGAGCGCATCATCCGCGAGGCG 178 Query 42924 GTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 || | ||||||| | |||||||| || | |||| ||||| ||| ||||||||||| Sbjct 179 GTCGCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAAC 238 Query 42984 CACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT 43043 |||||||||||| |||||||| ||| |||||||||| | || | | | || Sbjct 239 TCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTCGGC 298 Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 | | ||||| || | ||| |||||||||||||| | |||||| ||||| Sbjct 299 AACGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 358 Query 43104 GGCAAGACCAACTTTTTCGAGA 43125 |||||||||||||| ||||||| Sbjct 359 GGCAAGACCAACTTCTTCGAGA 380 >seq100 Length=52976 Score = 136 bits (150), Expect = 7e-27 Identities = 139/176 (79%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG-AGTCCCGACGCAAC 42691 |||||||||||||||||||| |||||||| | |||||| | | ||| || | Sbjct 52785 CCCTGCATCAAGAAGAAGGCCGACTGGGCTATGCGGTGGATCTCGGACGACCGGTCCATC 52844 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || || || | ||||| || || ||||||||||||||||||||||||||||| | || Sbjct 52845 TTT-GGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 52903 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 |||||||||||||||||||||| || ||| || ||||| || |||||||||||| Sbjct 52904 CGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTC-ATGCCGGGTCTCACCTTCTCG 52958 >seq64 Length=12022 Score = 123 bits (136), Expect = 5e-23 Identities = 222/321 (69%), Gaps = 5/321 (2%) Strand=Plus/Plus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | ||||| || || || | ||||||||||||||||| || || Sbjct 6228 GAACGAGCTCATCTCGCGTGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTTTC 6287 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGT 42925 |||||| | ||| | | || || ||||||| | || ||||| Sbjct 6288 T---CACCTCGAACGTCGTCCCGCTCCTCATCGCGTTGCACGCATCATCGCCGAAGCCGT 6344 Query 42926 GGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCA 42985 |||||||||||||||||| | || | | |||||||| || || |||| ||||| | Sbjct 6345 CGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCCTTGATCGGTATGAA-CT 6403 Query 42986 CGAC-CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTC 43044 |||| | |||||| |||||||| ||| || || |||| || || | | | || Sbjct 6404 CGACGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGCTGCTCGTCGCGCTCGGGA 6463 Query 43045 TCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGG 43104 | | |||||||||||| | ||| ||||| | |||||| |||||| |||||| Sbjct 6464 ACGACAAGCTCTACAACACGGAGAACCCTTTCGATTGGATGGAGCTGATCTCGATGGAGG 6523 Query 43105 GCAAGACCAACTTTTTCGAGA 43125 | ||||||||||| ||||||| Sbjct 6524 GAAAGACCAACTTCTTCGAGA 6544 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 || |||||||||||||| || ||||||||| | |||||| ||| | ||| | Sbjct 5993 CCTTGCATCAAGAAGAAAGCCGACTGGGCGTTGCGATGGATCTCTGATCCGAAGGCAGTG 6052 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||||||| | || | || || | || ||||||||||| || ||||| || | ||| Sbjct 6053 TTCGGCGAACGACTCATCGCGTTCGCAGCGGTCGAGGGCATATTTTTCTCCGGGTCGTTC 6112 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 || |||||||| ||||||||| || | | ||||||||| | ||||| ||| Sbjct 6113 GCGTCCATCTTTTGGCTCAAGAAGCGCGGGCTGATGCCCGGCTTGACCTTTTCG 6166 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 |||| || | || ||||| ||||||||||| |||||||| ||||| |||||||| | | Sbjct 5617 TCAAGCACGTTCTCGCCTTTTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCG 5676 Query 42472 CCAGGTTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 ||||| | || || | |||| ||||||||||||||||||||||||||||| Sbjct 5677 AGCGGTTCTCGTCCGAAGTTCAAGTA-GCCGAGGCGCGCTGCTTCTACGGCTTCCAGAT 5734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944326994415840