Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq243 102 2e-16 seq64 89.7 1e-12 >seq243 Length=9243 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 243486 CGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA 243545 ||| |||||| | | |||||| || || || | | ||| | || ||| | ||| Sbjct 148 CGACACGGTCGAGCGCATCATCCGCGAGGCGGTCGCGATCGAGCAAGAGTTCCTGACCGA 207 Query 243546 CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATT 243605 ||| |||| | ||| || ||||||||||| || |||||| | ||||||||||| || Sbjct 208 CGCGCTTCCCGTCAAGCTGATCGGCATGAACTCGGACCTCATGTGCCAGTACATCGAGTT 267 Query 243606 CGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCC 243665 || |||||||| | || ||||||| || | || || | ||||| | | ||||| Sbjct 268 TGTCGCCGACCGGTTGCTCGTCGCGCTCGGCAACGAAAAGATTTACAAGGCGACCAACCC 327 Query 243666 CTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 || | ||||||||| | || ||| | | || || || ||||||||||| Sbjct 328 GTTCGACTTTATGGACATGATCTCGATGGAGGGCAAGACCAACTTCTTCGA 378 >seq64 Length=12022 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||| | ||||| || || | ||| ||||| ||| | |||||| | || | || Sbjct 6328 ATCATCGCCGAAGCCGTCGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCC-GTCGC 6386 Query 243562 CTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || || |||||||| | ||| | ||||||||||| || || || ||||| | Sbjct 6387 CTTGATCGGTATGAACTCGACGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGCT 6446 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || ||||||| || | || || | |||||| | ||||||| || | | ||||| Sbjct 6447 GCTCGTCGCGCTCGGGAACGACAAGCTCTACAACACGGAGAACCCTTTCGATTGGATGGA 6506 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 ||| || ||| | | || || || ||||||||||| Sbjct 6507 GCTGATCTCGATGGAGGGAAAGACCAACTTCTTCGA 6542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102865388907900