Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq381 107 2e-18 seq236 100 3e-16 seq544 98.7 1e-15 seq893 96.9 3e-15 >seq381 Length=90481 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| ||||||||||| | || |||||| |||| || |||||||||||| Sbjct 86 GTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 145 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| |||||||||||||| || || || || || || || || || ||| Sbjct 146 GCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 205 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || || || || || | || | ||||| || |||| || Sbjct 206 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTACCCGTCAGGGTC 265 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 266 TTGACAAAGATTTGCAT 282 >seq236 Length=10160 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| ||||||||||| | || |||||| |||| || |||||||||||| Sbjct 10062 GTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 10121 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 ||| | ||||| |||||||||||||| || || || || Sbjct 10122 GCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTC 10159 >seq544 Length=109881 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| |||||||| | || || || || | ||||| || || || |||||||| || | Sbjct 82590 ACCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 82649 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || ||||||||||||||| | ||||| |||||||||||||| || Sbjct 82650 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGG 82709 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 82710 GATGCCCTCCTTGTCCTGGATCTT 82733 >seq893 Length=83276 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || |||||| |||| || |||||||||||| Sbjct 39247 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 39188 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | ||||| |||||||||||||| || || || || || || || || || Sbjct 39187 GCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 39135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499638342090960