Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq985 226 3e-54 >seq985 Length=76026 Score = 226 bits (250), Expect = 3e-54 Identities = 417/610 (68%), Gaps = 6/610 (1%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | ||||||||||| ||| |||||||| || ||| || |||| || | Sbjct 19138 TACTTCGGTTTCAAAACTCTCGAGCGCTCGTACCTGCTGCGGATCGACGGCAAAGTGGCG 19079 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||||| || || || |||| |||||||| ||| |||| || ||||| | |||||| | Sbjct 19078 GAGCGTCCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCACGGACCCGACATCAAG 19019 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG---GCCACCCCG 93900 || | | | | | || ||| ||| | | || || || | || Sbjct 19018 CGTGCTATCGAGACCTACAACTTGATGTCGGA---GCGCTACTTCACTCACGCGTCGCCC 18962 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 || ||||||||||| || ||||| || || | || || || ||||| | || | Sbjct 18961 ACGCTGTTCAACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATG 18902 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 ||| |||||| ||| || || | ||||| |||||| || ||| |||||| || Sbjct 18901 CAGGACGACTCGATCGAAGGCATCTACGACACGCTCAAGACTTGCGCGCTCATCTCCAAG 18842 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 ||||| || ||||| | | ||| || | || || | ||||| |||||| Sbjct 18841 ACTGCGGGCGGGATCGGTCTTTCGATTCACAACATCCGCGCGACCGGTTCGTACATCGCG 18782 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || || || ||| ||| |||||| |||| ||||||||||| |||||||||||| ||||| Sbjct 18781 GGCACGAACGGCTACTCGAACGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCG 18722 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 || ||||||||||| || || | | | || | |||||| |||| || ||||| Sbjct 18721 CGTTACGTGGACCAAGGAGGCAATAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCG 18662 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||||||||| | | ||| ||||||| || |||||||||||||| || | Sbjct 18661 TGGCACGCGGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAAGAAGAAGTC 18602 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | || |||||||||||| ||| || ||| | || ||||| || ||| ||||||||||| Sbjct 18601 CGCGCGCGAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTCTTCATGGAACGCGTCGAG 18542 Query 94321 AAAAACTCCG 94330 | ||| ||| Sbjct 18541 CAGAACGCCG 18532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494716805702640