Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq243 158 1e-33
seq381 105 7e-18
seq64 105 7e-18
seq544 87.8 2e-12
>seq243
Length=9243
Score = 158 bits (174), Expect = 1e-33
Identities = 231/321 (72%), Gaps = 7/321 (2%)
Strand=Plus/Plus
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562
|||||| | || ||||||||||| || || ||||| |||||||| |||||| || |
Sbjct 65 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 122
Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621
||| | | || || | | | | |||||| || | |||| || ||||||||
Sbjct 123 -CGCACCTCGAACGCCGACC-GCACCCCGACACGGTCGAGCGCATCATCCGCGAGGCGGT 180
Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681
|| ||||| | ||||| | || | |||||| || ||| ||||| | ||||||||| |
Sbjct 181 CGCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAACTC 240
Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741
| | ||||||| |||||||||||||||| || || || || | || |||| ||||
Sbjct 241 GGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTC-GGCA 299
Query 52742 GCCAAAGTACTT-CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800
| ||| | || ||| || ||| ||||| || |||||| ||| || ||| | ||||
Sbjct 300 ACGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAGG 359
Query 52801 GCAAGACCAACTTTTTCGAGA 52821
||||||||||||| |||||||
Sbjct 360 GCAAGACCAACTTCTTCGAGA 380
>seq381
Length=90481
Score = 105 bits (116), Expect = 7e-18
Identities = 165/235 (70%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||| | || | || | | | ||||||||||| |||||||| ||
Sbjct 55 GCCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGA 114
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || ||||||||| || || |||| | |||| || ||||| ||||| || ||
Sbjct 115 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGG 174
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | | || | ||||| | ||||| ||
Sbjct 175 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 234
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTAT 138621
||||| ||| | ||| ||||| ||||| || || ||||| || ||||||| ||||
Sbjct 235 CTCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACAAAGATTTGCATGG-TTAT 288
>seq64
Length=12022
Score = 105 bits (116), Expect = 7e-18
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685
||||| |||||||| || || | ||| ||||| |||| || | || |||||| || |
Sbjct 6349 ATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCCTTGATCGGTATGAACTCGACG 6408
Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745
| |||||| |||||||||||||||||||||| || ||| | || ||||||| |
Sbjct 6409 TTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGCTGCTCGTCGCGCTCGGGAACGAC 6468
Query 52746 AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAG 52805
||| || |||| | || || || || | ||| | || ||| | ||||| |||
Sbjct 6469 AAGCTCTACAACACGGAGAACCCTTTCGATTGGATGGAGCTGATCTCGATGGAGGGAAAG 6528
Query 52806 ACCAACTTTTTCGAGA 52821
|||||||| |||||||
Sbjct 6529 ACCAACTTCTTCGAGA 6544
>seq544
Length=109881
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || ||||| || | || | || | | | |||||||| || |||||||||||
Sbjct 82591 CCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 82650
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||| || || |||| | |||| |||||||| ||||| || ||
Sbjct 82651 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 82710
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | ||||||| |||||| |||
Sbjct 82711 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 82770
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAG 138593
|||| || | ||| || || || ||
Sbjct 82771 TCGAGGGTGATCGTCTTGCCCGTGAG 82796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496255985808480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |