Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq243 158 1e-33 seq381 105 7e-18 seq64 105 7e-18 seq544 87.8 2e-12 >seq243 Length=9243 Score = 158 bits (174), Expect = 1e-33 Identities = 231/321 (72%), Gaps = 7/321 (2%) Strand=Plus/Plus Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || ||||||||||| || || ||||| |||||||| |||||| || | Sbjct 65 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 122 Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 ||| | | || || | | | | |||||| || | |||| || |||||||| Sbjct 123 -CGCACCTCGAACGCCGACC-GCACCCCGACACGGTCGAGCGCATCATCCGCGAGGCGGT 180 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 || ||||| | ||||| | || | |||||| || ||| ||||| | ||||||||| | Sbjct 181 CGCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAACTC 240 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741 | | ||||||| |||||||||||||||| || || || || | || |||| |||| Sbjct 241 GGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTC-GGCA 299 Query 52742 GCCAAAGTACTT-CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | ||| | || ||| || ||| ||||| || |||||| ||| || ||| | |||| Sbjct 300 ACGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAGG 359 Query 52801 GCAAGACCAACTTTTTCGAGA 52821 ||||||||||||| ||||||| Sbjct 360 GCAAGACCAACTTCTTCGAGA 380 >seq381 Length=90481 Score = 105 bits (116), Expect = 7e-18 Identities = 165/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | || | | | ||||||||||| |||||||| || Sbjct 55 GCCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGA 114 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||| || || |||| | |||| || ||||| ||||| || || Sbjct 115 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGG 174 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||| | ||||| || Sbjct 175 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 234 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTAT 138621 ||||| ||| | ||| ||||| ||||| || || ||||| || ||||||| |||| Sbjct 235 CTCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACAAAGATTTGCATGG-TTAT 288 >seq64 Length=12022 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||| |||||||| || || | ||| ||||| |||| || | || |||||| || | Sbjct 6349 ATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCCTTGATCGGTATGAACTCGACG 6408 Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745 | |||||| |||||||||||||||||||||| || ||| | || ||||||| | Sbjct 6409 TTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGCTGCTCGTCGCGCTCGGGAACGAC 6468 Query 52746 AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAG 52805 ||| || |||| | || || || || | ||| | || ||| | ||||| ||| Sbjct 6469 AAGCTCTACAACACGGAGAACCCTTTCGATTGGATGGAGCTGATCTCGATGGAGGGAAAG 6528 Query 52806 ACCAACTTTTTCGAGA 52821 |||||||| ||||||| Sbjct 6529 ACCAACTTCTTCGAGA 6544 >seq544 Length=109881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | || | || | | | |||||||| || ||||||||||| Sbjct 82591 CCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 82650 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || |||| | |||| |||||||| ||||| || || Sbjct 82651 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 82710 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||||| |||||| ||| Sbjct 82711 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 82770 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAG 138593 |||| || | ||| || || || || Sbjct 82771 TCGAGGGTGATCGTCTTGCCCGTGAG 82796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255985808480