Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq64 129 6e-25 seq381 113 4e-20 seq243 104 2e-17 seq544 87.8 2e-12 >seq64 Length=12022 Score = 129 bits (142), Expect = 6e-25 Identities = 224/327 (69%), Gaps = 19/327 (6%) Strand=Plus/Plus Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAAC 47303 |||||||| |||||| | ||||||||||| |||||| |||||||||| ||| || Sbjct 6229 AACGAGCTCATCTCGCGTGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTTT-- 6286 Query 47304 ACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGA--------CATGTTTGCCG 47355 || |||| | | ||| || | ||| || ||| | |||| Sbjct 6287 -CTCACCTCGAAC--------GTCGTCCCGCTCCTCATCGCGTTGCACGCATCATCGCCG 6337 Query 47356 AAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAA 47415 ||||||||| || |||| |||||| || |||| || ||||||| | || | || | Sbjct 6338 AAGCCGTCGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCCTTGATCGGTA 6397 Query 47416 TGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGC 47475 ||||| || | ||||| | |||||||||| ||||| || ||||| |||||||| || Sbjct 6398 TGAACTCGACGTTGATGTGCCAGTACATCGAGTTTGTGGCGGACCGGCTGCTCGTCGCGC 6457 Query 47476 TAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGC 47535 | | | |||| | ||| |||| ||||| || ||||| | ||| | || ||| Sbjct 6458 TCGGGAACGACAAGCTCTACAACACGGAGAACCCTTTCGATTGGATGGAGCTGATCTCGA 6517 Query 47536 TCGAGGGCAAGACCAACTTTTTCGAGA 47562 | ||||| ||||||||||| ||||||| Sbjct 6518 TGGAGGGAAAGACCAACTTCTTCGAGA 6544 >seq381 Length=90481 Score = 113 bits (124), Expect = 4e-20 Identities = 151/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || |||||||| | ||||| || || ||||| || || Sbjct 86 GTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 145 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 146 GCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 205 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| |||||| |||| || | ||| || || ||||| || Sbjct 206 ACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTACCCGTCAGGGT 264 Query 127096 TTTTACAAAAATCTGCATGGCTTATT 127121 || ||||| || ||||||| ||||| Sbjct 265 CTTGACAAAGATTTGCATGG-TTATT 289 >seq243 Length=9243 Score = 104 bits (114), Expect = 2e-17 Identities = 226/330 (68%), Gaps = 25/330 (8%) Strand=Plus/Plus Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA- 47302 |||||||| |||||| | ||||| || || |||||| |||||||||| ||| || | Sbjct 65 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 124 Query 47303 CAC-TAGA--GTCGATCAAAAGTTGGACGTGCCCACCGTC-AGCGACATGTTTGCCGAAG 47358 ||| | || | ||| | | || ||| ||| |||| ||| | ||| | Sbjct 125 CACCTCGAACGCCGACC-------GCACCCCGACACGGTCGAGCG-CATCATCCGCGAGG 176 Query 47359 CCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAAT 47416 | ||||| || ||| ||||| | |||| || || |||| || || | || || Sbjct 177 CGGTCGCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGA--TCGGCAT 234 Query 47417 GAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCT 47476 |||| |||| | ||| | |||||||||| |||||||||||||| ||||||| ||| Sbjct 235 GAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCT 294 Query 47477 ----AAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || | | ||||||||| | | || || ||||| |||||| ||| || | Sbjct 295 CGGCAACGAA----AAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCT 350 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGA 47562 || | ||||||||||||||||| ||||||| Sbjct 351 CGATGGAGGGCAAGACCAACTTCTTCGAGA 380 >seq544 Length=109881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || || | || | || | || ||||| || || || ||||| || Sbjct 82591 CCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 82650 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || || |||| | |||||||| ||||| || Sbjct 82651 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 82710 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| ||||| | |||||| Sbjct 82711 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGAC 82769 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| ||| | ||| ||||| || || Sbjct 82770 CTCGAGGGTGATCGTCTTGCCCGTGAG 82796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494654152160