Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq985 168 8e-37 seq100 82.4 9e-11 >seq985 Length=76026 Score = 168 bits (186), Expect = 8e-37 Identities = 428/641 (67%), Gaps = 9/641 (1%) Strand=Plus/Plus Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || |||||||||||||| | || | |||||||| |||| | |||||| || | | Sbjct 18342 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATGGCGTAC 18401 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | || ||| | | | ||| ||||| || ||||||| ||||||||| | | Sbjct 18402 CACAGCTTCTGCGCCGAGATC-GTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 18460 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 || ||| ||||| || || |||| ||| || || || | | || ||||| Sbjct 18461 AAGCGCCCTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGCGCTTCGGCGGGGCAGAA 18520 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 || | ||| | | || ||| || || | |||||||||||| |||||||| ||||| Sbjct 18521 CAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCACAGCGC 18580 Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 ||||||| || || ||| ||||||| | || || || || | || | || Sbjct 18581 GAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 18640 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTGC-GACG 116906 ||| | ||| |||||||||||||| || ||||| | ||||| | || | || | Sbjct 18641 GTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTATT 18700 Query 116907 ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966 || | |||| || || | |||||| ||| || ||||| ||||| || | ||| || Sbjct 18701 GCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGCC 18760 Query 116967 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATG 117024 | || | ||| || || ||| ||| ||||| || | | || | || | ||| || Sbjct 18761 GTTCGAGTAGCCGTTCGTGCCCGCGATGTACGA-AC-CGGTCGCGCGGATGTTGTGAATC 18818 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 | ||| || || || || ||| ||||| | ||||| | |||| || ||||| Sbjct 18819 GAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGTAG 18878 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144 || || ||||||||||| ||| | | || |||||||||| ||| | ||| || Sbjct 18879 ATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGTGG 18938 Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 || ||||| |||||||| || || || | |||||| |||| Sbjct 18939 GGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAA 18979 >seq100 Length=52976 Score = 82.4 bits (90), Expect = 9e-11 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 127564 CGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGA 127623 ||||||| ||||| ||||||||||| |||||||| | |||||| || | || || Sbjct 52958 CGAGAAGGTGAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGA 52899 Query 127624 GCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA---GGA 127680 ||| ||||||||||| ||||| || |||||||| | || || || |||| ||| Sbjct 52898 GCCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACCAAAGATGGA 52839 Query 127681 GCGGGACTTTGTATCA-AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGA 127739 ||| | || | | |||| ||| ||||| | ||||| |||| ||| || |||| Sbjct 52838 CCGG----TCGTCCGAGATCCACCGCATAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGA 52783 Query 127740 CGGT 127743 | || Sbjct 52782 CTGT 52779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499270419440