Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq243 118 2e-21 seq985 107 3e-18 seq64 104 4e-17 >seq243 Length=9243 Score = 118 bits (130), Expect = 2e-21 Identities = 223/324 (69%), Gaps = 13/324 (4%) Strand=Plus/Minus Query 159651 TCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCT 159710 ||||||| |||||||||||||||||||| || || ||||| || |||| ||||| Sbjct 380 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGG 321 Query 159711 TCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGA 159770 || | | || ||| ||||| || | ||||||| ||| || ||||| |||| Sbjct 320 TCGCCTTGTAAATCTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGA 261 Query 159771 TGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACA 159830 |||| ||||| | || |||| || || | |||| | ||||| ||||| || | || Sbjct 260 TGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACGGGAAGCGCGTCGGTCA 201 Query 159831 GAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT-TC---GTAC 159886 | ||||| | ||| ||| ||||||| ||| | || || ||| ||| || || | Sbjct 200 GGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCGAC-CGTGTCGGGGTGC 142 Query 159887 -CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 |||| | | | ||| | || |||||||| ||||||||| ||| || || Sbjct 141 GGTCGGCGTTC-------GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACC 89 Query 159946 CTCGTCCCGAGAGATGAACTCGTT 159969 |||||| || ||||||| |||||| Sbjct 88 CTCGTCGCGCGAGATGAGCTCGTT 65 >seq985 Length=76026 Score = 107 bits (118), Expect = 3e-18 Identities = 350/536 (65%), Gaps = 16/536 (3%) Strand=Plus/Plus Query 205166 TCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCG 205225 ||||| || |||||| ||||||||| || | || || || || || | | | | || Sbjct 18552 TCCATGAAGAGGTCGGGGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCT 18611 Query 205226 TCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAA 205284 | || ||||||| | ||| || ||| || | ||||| |||||||||||||| | Sbjct 18612 TTGCCGTGGTTCTTGCGGAGGTCGAGG-AAGTCGAAGATGTCCGCGTGCCACGGCTCAAG 18670 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344 | | || | ||||| || | ||| || || || |||||||| || | | | Sbjct 18671 GTAGATCGCGAACGCGCCGGGTCGCTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTT 18730 Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGC 205404 |||||| || || ||||| ||||| | ||||| | | |||||||||| |||| Sbjct 18731 GTTGAAGACGCGGAGCATAGGCACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTA 18790 Query 205405 CGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGAT 205464 ||| || || | | |||| || | || |||||||| | | ||||| ||| Sbjct 18791 CGAACCGGTCGCGCGGATGTTGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGAT 18850 Query 205465 CTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCA 205523 | |||| | ||||| || ||| |||||||||| |||| || |||||| || || | Sbjct 18851 GAGCGCGCAAGTCTTG-AGCGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGA 18909 Query 205524 CCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGG 205583 | || |||| || | || | | | ||| || |||| ||| |||||||| | Sbjct 18910 CGAGGAAGCAGGACGAGAGTTGCGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACG 18969 Query 205584 CGTGGCTGAAGCGCTTCTCGCTCAAACACC----TGTAGGTCTC--CAGCACGCTCTCCA 205637 |||| ||||| | ||||| ||| | |||||||||| |||||| || | Sbjct 18970 CGTGAGTGAAG----TAGCGCTCCGACATCAAGTTGTAGGTCTCGATAGCACG--CTTGA 19023 Query 205638 GATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCC 205693 ||| ||||| || || | ||| | | ||||| | ||| ||||| | |||| Sbjct 19024 TGTCGGGTCCGTGGATGCCGACGGCAACGCGCATGAGCATGTGCTGAGGACGCTCC 19079 >seq64 Length=12022 Score = 104 bits (114), Expect = 4e-17 Identities = 217/320 (68%), Gaps = 5/320 (2%) Strand=Plus/Minus Query 159651 TCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCT 159710 ||||||| ||||||||||| |||||||| || || ||||| | |||| ||||||| Sbjct 6544 TCTCGAAGAAGTTGGTCTTTCCCTCCATCGAGATCAGCTCCATCCAATCGAAAGGGTTCT 6485 Query 159711 TCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGA 159770 | || ||| |||| ||||| || | |||| || ||| |||||||| |||| Sbjct 6484 CCGTGTTGTAGAGCTTGTCGTTCCCGAGCGCGACGAGCAGCCGGTCCGCCACAAACTCGA 6425 Query 159771 TGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACA 159830 |||| |||||| | |||| || || | || ||||| || || || | || Sbjct 6424 TGTACTGGCACATCAACGTCGAGTTCATACCGATCAAGGCGACGGGCAGTGCGTCGGTCA 6365 Query 159831 GAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCCCG 159890 ||||||||||| |||||||| ||||||| | | |||| | ||| || Sbjct 6364 AGAACTCCTTCTCGATCTCGACGGCTTCGGCGATGA--TGCGTGCAACG--CGATGAGGA 6309 Query 159891 GCTTGCCCAAAAT-GTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCG 159949 || | | | | | ||| ||| |||||||| ||||||||| ||| || || ||| Sbjct 6308 GCGGGACGACGTTCGAGGTGAGAAAAGAGGAGGCAGGCAAAGTCGGTGTGGAGGCCTTCG 6249 Query 159950 TCCCGAGAGATGAACTCGTT 159969 || || ||||||| |||||| Sbjct 6248 TCACGCGAGATGAGCTCGTT 6229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795144922619040