Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq64 152 5e-32 seq381 127 2e-24 seq544 118 1e-21 seq100 114 1e-20 seq893 98.7 1e-15 seq243 91.5 1e-13 seq236 84.2 2e-11 >seq64 Length=12022 Score = 152 bits (168), Expect = 5e-32 Identities = 128/157 (82%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || |||||||| ||||| ||||||||| | || || ||||| | ||| ||||| Sbjct 5735 GATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGCTACTTGAACTTCGGACGAGAACCGCTC 5676 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||| || || ||||||||||||||||| ||||||||||||||| || ||||||||||| Sbjct 5675 GACGAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAAAAGGCGAGAACGTGCTTGAT 5616 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCG 133374 || || | || ||||||||||| |||||||||||| Sbjct 5615 AAAGTGCTGTTCCTTGTCGTTCAACCGCTCCCAGTCG 5579 Score = 104 bits (114), Expect = 2e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || |||||||||||||| || ||||| || ||||||||||| |||| ||||| || Sbjct 6162 AAGGTCAAGCCGGGCATCAGCCCGCGCTTCTTGAGCCAAAAGATGGACGCGAACGACCCG 6103 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAAC-GTGGCTTC 133064 || || || | ||||||||| || ||||| || | || || ||||||||| || |||| Sbjct 6102 GAGAAAAATATGCCCTCGACCGCTGCGAACGCGATGAGTCGTTCGCCGAACACTGCCTTC 6043 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 | | |||||| |||| |||||| ||||| || | |||| ||| || Sbjct 6042 GGATC-AGAGATCCATCGCAACGCCCAGTCGGCTTTCTTCTTGATGCAAGG 5993 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 132626 TCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGG 132685 |||| || || || || |||||||||| || || ||| ||| |||| || ||||| Sbjct 6544 TCTCGAAGAAGTTGGTCTTTCCCTCCATCGAGATCAGCTCCATCCAATCGAAAGGGTTCT 6485 Query 132686 CTGTGTTGTAGTGCTTG--GTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743 | ||||||||| ||||| || || || |||||||||||| ||| ||||| ||||| Sbjct 6484 CCGTGTTGTAGAGCTTGTCGTTCCCG--AGCGCGACGAGCAGCCGGTCCGCCACAAACTC 6427 Query 132744 GATGTATTGCGACAT 132758 |||||| || |||| Sbjct 6426 GATGTACTGGCACAT 6412 >seq381 Length=90481 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || ||||| || || ||||| |||| |||||| || | Sbjct 282 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCCTCG 223 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || ||||||| Sbjct 222 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 164 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| ||||||||| || ||||| Sbjct 163 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 104 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| |||| || || | || || ||| | | |||||| Sbjct 103 CATCCAAAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTCCGTGGCGGC 55 >seq544 Length=109881 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||||||||| || |||||| |||| |||||| | |||||| | | |||| | || Sbjct 82796 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAA 82738 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| || ||| ||||||| ||||| ||||| | || || Sbjct 82737 GGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGG 82678 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || |||| ||||| || |||||||||||||| ||||| |||| || Sbjct 82677 CAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 82618 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || || ||| | || || Sbjct 82617 CCACCTCGTCCTCCGCTTGCGCGGTGG 82591 >seq100 Length=52976 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || |||||||| ||||| || |||||||| || |||| |||||| |||||| |||||| Sbjct 52945 CCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAG 52886 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||||||| ||||| || |||||||| || || || ||| | | | | Sbjct 52885 ATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACCAAAGATGGACCGGTCGTCCGAG 52826 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 ||||| |||| ||||| |||||||| | |||| ||| || Sbjct 52825 ATCCACCGCATAGCCCAGTCGGCCTTCTTCTTGATGCAGGG 52785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327 |||| |||||||||| || ||||||||||||||||| |||||| || |||||||| | Sbjct 52416 CGAACCGCTCGACCAAGTTCTCGTTGACGATGCCGTCCGAGGCGGCAAAGAAGGCCAGTA 52357 Query 133328 CGTGCTTGATGAA 133340 ||||||||||||| Sbjct 52356 CGTGCTTGATGAA 52344 >seq893 Length=83276 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| ||||||| ||||| ||||| | || ||||| Sbjct 39135 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAG 39194 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || |||| ||||||||| |||||||||||||| ||||| |||| || || Sbjct 39195 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCA 39253 >seq243 Length=9243 Score = 91.5 bits (100), Expect = 1e-13 Identities = 217/323 (67%), Gaps = 14/323 (4%) Strand=Plus/Minus Query 132626 TCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGG 132685 |||| || || || || || ||||||| || || | |||||| || || ||||||| Sbjct 380 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGG 321 Query 132686 CTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACT 132742 | ||||| ||| | |||||| | ||||||||| || |||||| || |||| Sbjct 320 TCGCCTTGTAAATCTTTTCGTTGCCGAGCG---CGACGAGCAACCGGTCGGCGACAAACT 264 Query 132743 CGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGG 132802 ||||||| || ||||| || | || | || | ||| || || ||||| |||| Sbjct 263 CGATGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACGGGAAGCGCGTCGG 204 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT-TTCCCTAACG---CGCGCC 132858 | || || ||||||||| |||||||| ||| || ||| | | | || || | Sbjct 203 TCAGGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCGACCGTGTCGGGGT 144 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 ||| |||| |||| | | ||| ||| | | ||| ||||||||| || | ||| Sbjct 143 GCGGTCGG-CGTT---CGAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCC 88 Query 132919 TCGTCCCTGGAAATGAGTTCGTT 132941 ||||| | || ||||| ||||| Sbjct 87 TCGTCGCGCGAGATGAGCTCGTT 65 >seq236 Length=10160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 ||||| || || ||||||| ||||| ||||| | || ||||| ||||| || |||| Sbjct 10159 GAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGC 10100 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||| || ||||||||||||||||| |||| || || Sbjct 10099 CGCACCCTCTCGGATTACAACATCCAAAAGGAGTCGACCCTCCA 10056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166335266560