Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq64 152 5e-32
seq381 127 2e-24
seq544 118 1e-21
seq100 114 1e-20
seq893 98.7 1e-15
seq243 91.5 1e-13
seq236 84.2 2e-11
>seq64
Length=12022
Score = 152 bits (168), Expect = 5e-32
Identities = 128/157 (82%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
||| || |||||||| ||||| ||||||||| | || || ||||| | ||| |||||
Sbjct 5735 GATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGCTACTTGAACTTCGGACGAGAACCGCTC 5676
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
||| || || ||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 5675 GACGAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAAAAGGCGAGAACGTGCTTGAT 5616
Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCG 133374
|| || | || ||||||||||| ||||||||||||
Sbjct 5615 AAAGTGCTGTTCCTTGTCGTTCAACCGCTCCCAGTCG 5579
Score = 104 bits (114), Expect = 2e-17
Identities = 127/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005
|| |||||||||||||| || ||||| || ||||||||||| |||| ||||| ||
Sbjct 6162 AAGGTCAAGCCGGGCATCAGCCCGCGCTTCTTGAGCCAAAAGATGGACGCGAACGACCCG 6103
Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAAC-GTGGCTTC 133064
|| || || | ||||||||| || ||||| || | || || ||||||||| || ||||
Sbjct 6102 GAGAAAAATATGCCCTCGACCGCTGCGAACGCGATGAGTCGTTCGCCGAACACTGCCTTC 6043
Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115
| | |||||| |||| |||||| ||||| || | |||| ||| ||
Sbjct 6042 GGATC-AGAGATCCATCGCAACGCCCAGTCGGCTTTCTTCTTGATGCAAGG 5993
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/135 (75%), Gaps = 4/135 (3%)
Strand=Plus/Minus
Query 132626 TCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGG 132685
|||| || || || || |||||||||| || || ||| ||| |||| || |||||
Sbjct 6544 TCTCGAAGAAGTTGGTCTTTCCCTCCATCGAGATCAGCTCCATCCAATCGAAAGGGTTCT 6485
Query 132686 CTGTGTTGTAGTGCTTG--GTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743
| ||||||||| ||||| || || || |||||||||||| ||| ||||| |||||
Sbjct 6484 CCGTGTTGTAGAGCTTGTCGTTCCCG--AGCGCGACGAGCAGCCGGTCCGCCACAAACTC 6427
Query 132744 GATGTATTGCGACAT 132758
|||||| || ||||
Sbjct 6426 GATGTACTGGCACAT 6412
>seq381
Length=90481
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || || ||||| || || ||||| |||| |||||| || |
Sbjct 282 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCCTCG 223
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || |||| ||||| ||||| || || |||||||
Sbjct 222 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 164
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | || ||||| ||||| || |||| ||||||||| || |||||
Sbjct 163 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 104
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||||||| |||| || || | || || ||| | | ||||||
Sbjct 103 CATCCAAAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTCCGTGGCGGC 55
>seq544
Length=109881
Score = 118 bits (130), Expect = 1e-21
Identities = 152/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323
||||||||||| || |||||| |||| |||||| | |||||| | | |||| | ||
Sbjct 82796 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAA 82738
Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
| || |||| ||||| ||||| || ||| ||||||| ||||| ||||| | || ||
Sbjct 82737 GGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGG 82678
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
||| ||||| || |||| ||||| || |||||||||||||| ||||| |||| ||
Sbjct 82677 CAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 82618
Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || || ||| | || ||
Sbjct 82617 CCACCTCGTCCTCCGCTTGCGCGGTGG 82591
>seq100
Length=52976
Score = 114 bits (126), Expect = 1e-20
Identities = 122/161 (76%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|| |||||||| ||||| || |||||||| || |||| |||||| |||||| ||||||
Sbjct 52945 CCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAG 52886
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| |||||||||||| ||||| || |||||||| || || || ||| | | | |
Sbjct 52885 ATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACCAAAGATGGACCGGTCGTCCGAG 52826
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115
||||| |||| ||||| |||||||| | |||| ||| ||
Sbjct 52825 ATCCACCGCATAGCCCAGTCGGCCTTCTTCTTGATGCAGGG 52785
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327
|||| |||||||||| || ||||||||||||||||| |||||| || |||||||| |
Sbjct 52416 CGAACCGCTCGACCAAGTTCTCGTTGACGATGCCGTCCGAGGCGGCAAAGAAGGCCAGTA 52357
Query 133328 CGTGCTTGATGAA 133340
|||||||||||||
Sbjct 52356 CGTGCTTGATGAA 52344
>seq893
Length=83276
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || ||| ||||||| ||||| ||||| | || |||||
Sbjct 39135 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAG 39194
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
||||| || |||| ||||||||| |||||||||||||| ||||| |||| || ||
Sbjct 39195 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCA 39253
>seq243
Length=9243
Score = 91.5 bits (100), Expect = 1e-13
Identities = 217/323 (67%), Gaps = 14/323 (4%)
Strand=Plus/Minus
Query 132626 TCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGG 132685
|||| || || || || || ||||||| || || | |||||| || || |||||||
Sbjct 380 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGG 321
Query 132686 CTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACT 132742
| ||||| ||| | |||||| | ||||||||| || |||||| || ||||
Sbjct 320 TCGCCTTGTAAATCTTTTCGTTGCCGAGCG---CGACGAGCAACCGGTCGGCGACAAACT 264
Query 132743 CGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGG 132802
||||||| || ||||| || | || | || | ||| || || ||||| ||||
Sbjct 263 CGATGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACGGGAAGCGCGTCGG 204
Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT-TTCCCTAACG---CGCGCC 132858
| || || ||||||||| |||||||| ||| || ||| | | | || || |
Sbjct 203 TCAGGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCGACCGTGTCGGGGT 144
Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918
||| |||| |||| | | ||| ||| | | ||| ||||||||| || | |||
Sbjct 143 GCGGTCGG-CGTT---CGAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCC 88
Query 132919 TCGTCCCTGGAAATGAGTTCGTT 132941
||||| | || ||||| |||||
Sbjct 87 TCGTCGCGCGAGATGAGCTCGTT 65
>seq236
Length=10160
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402
||||| || || ||||||| ||||| ||||| | || ||||| ||||| || ||||
Sbjct 10159 GAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGC 10100
Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
||||||||| || ||||||||||||||||| |||| || ||
Sbjct 10099 CGCACCCTCTCGGATTACAACATCCAAAAGGAGTCGACCCTCCA 10056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500166335266560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |