Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq851 307 1e-78 seq1025 178 2e-39 >seq851 Length=36452 Score = 307 bits (340), Expect = 1e-78 Identities = 548/800 (69%), Gaps = 0/800 (0%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || || || | ||||||||| ||||| | || ||||| ||||| ||||| || ||||| Sbjct 6029 TCGCCGGTGAGGATGGCGGCCTGGACGGCGGCGCCGTACGCGACGGCCTCGTCCGGGTTG 5970 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || | || || ||||| ||| | || || | | | || | |||| Sbjct 5969 ATCGACTTGTTGGGCTCCTTGCCGTTGAAAAAGTCTGAGACGAGCTTCTGGACACGCGGG 5910 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || ||||| || ||||| | || || || || || | || |||||||| ||| Sbjct 5909 ATACGGGTCGAACCGCCGACGAGGACAATCTCGTTGACCGACTGCTTGTCGATCTTCGAG 5850 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || || ||||| || ||||| ||||||||||| || || ||| Sbjct 5849 TCGCGGAGGACCTTCTCGACCGGCTCCATGGTGCCGCGGAACAAGTCGGCGCAGAGCTCC 5790 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| || || || ||||| || | ||| ||| | | ||| || || Sbjct 5789 TCGAAACGGGCACGGGTGATCGAGGTGTAGAAGTCGATGCCCTCGAAGAGCGAGTCGATC 5730 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || || || || || || | ||| || | || ||||| |||||||| || || || || Sbjct 5729 TCGATAGTGGTCTGGGCGGCCGACGACAGGGTGCGCTTGGCGCGCTCGCAGGCGGTGCGG 5670 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| || ||||| || | ||| | | || ||||| | || || || ||||| Sbjct 5669 AGACGGCGGAGGGCGCGGGCGTTGGACGTGAGGTCCTTCTTGTTCTTGCGCTTGAACTCG 5610 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | ||||||| | ||| | || || || ||||| || | ||| || || || Sbjct 5609 GCGCAGAAGTGGGTGACGAGGCGGTTGTCAAAGTCCTCACCGCCGAGGTGGGTGTCACCG 5550 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 ||||| || ||||| || ||||| || | || || | | | ||| || || ||||| Sbjct 5549 GCGGTGGCCTTGACCTCGAAGATGCCCTCCTCGATCGTGAGGAGCGAGACGTCGAACGTG 5490 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 || || |||| ||| |||||||| |||||| | ||| | || ||||| ||||| ||| Sbjct 5489 CCGCCGCCCAAGTCGAAAATGAGGACGTTCTTCTCGCCCTCGGACTTCTTGTCGAGGCCG 5430 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 |||||||| || || || || || || || || || || || ||| ||||| | || Sbjct 5429 TACGCGATCGCGGCGGCGGTCGGCTCGTTGATGATGCGGAGGACGTTGAGGCCCGAGATG 5370 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 || | || || || ||||| || || ||||| ||||| |||||||||||||| || ||| Sbjct 5369 GTACCGGCGTCCTTGGTCGCCTGACGCTGCGAGTCGTTGAAGTAGGCCGGGACGGTGACG 5310 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| |||| | ||||| || | || || | || ||||| ||| || Sbjct 5309 ACGGCGTTGCTGACCGTGCCTCCGAGGTATGCCTCGGCCGTCTCCTTCATCTTGAGGAGG 5250 Query 7790 ACCATCGATGAAATCTCTTC 7809 |||||||| || ||||| || Sbjct 5249 ACCATCGACGAGATCTCCTC 5230 >seq1025 Length=33527 Score = 178 bits (196), Expect = 2e-39 Identities = 545/835 (65%), Gaps = 17/835 (2%) Strand=Plus/Plus Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || || | || |||||| ||||| | || ||||| ||||| ||||| || ||||| ||| Sbjct 7422 CCGGTGAGGACGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCGTCCGGGTTGATC 7481 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || ||||| | |||| || | || || | | || || |||||||| Sbjct 7482 GACTTGTTCAGCTGGCGACCGCCGAAGAACTCGGAGACGAGCGACTGGATCTTCGGGATA 7541 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || ||||| |||||||| | || || || | || || || || ||||| | ||| Sbjct 7542 CGGGTCGAGCCACCGACGAGGACAATGTCGTCGACCTTGGAGCGGTCCATCTTGGCGTCC 7601 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT--CCT 7250 || || ||||| || || | ||||| ||| | | | ||| Sbjct 7602 TTGAGGACCTTCTCGACGGGGTCGAGGGTCGAGCGGAAG--GTCGCGGCGTTGATGTCCT 7659 Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310 | ||||| |||||||| || || | |||| || |||| | | | | ||| || | | Sbjct 7660 CGAAACGGGCACGGGTGATCGAAGCCGAGAAGTCCTCGCCCTGGAAGAGCGAGTCGACCT 7719 Query 7311 CAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTA 7370 | | ||| || || | ||| || | || ||||| || ||||| || || | || | Sbjct 7720 CGACGGTGGTCTGGGTGACCGACGAGAGGGTGCGCTTCGCACGCTCGCAGGCGGACCGGA 7779 Query 7371 AACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT-AAACTCT 7429 ||| || |||||||| | || || || || || ||| || | | | | |||||| Sbjct 7780 GACGGCGGAGGGCACGGGCGTCGCCCGAGATGTCGAGCTTC-GTCTTCTTCTCAAACTCC 7838 Query 7430 TCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | |||||| |||| |||| || || || |||||||| | ||| || || || Sbjct 7839 TTCTTGAAGTGCTCGA-GGAGGGCGTTGTCAAAGTCCTCACCACCGAGGTGAGTGTCACC 7897 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 ||||| || ||||| |||||| ||||| || | | ||| ||||| ||||| Sbjct 7898 GGCGGTGGCCTTGACGGCAAAGACGCCTCCGGTGATCGAGAGGAGCGAGACATCGAACGT 7957 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-------CGTCTTTGTT--CTT 7599 || ||||||| ||| || ||||| || || | || | | ||| || || Sbjct 7958 GCCGCCACCCAAGTCGAAGATGAGGACCATCTTCTCCTTCTGCGACTTCTCGGTCGCCTC 8017 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 |||| |||||||||||||| || || || || || || || ||||| || || || Sbjct 8018 GCCGAGGCCGTACGCGATAGCGGCGGCGGTCGGCTCGTTGATGATACGGAGGACGTCGAG 8077 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 ||| || || || | || || || |||| | || ||||| ||||| ||||||||||| Sbjct 8078 GCCGGCGATCGTGCCGGCGTCCTTGGTCGAGAGACGCTGCGAGTCGTTGAAGTAGGCCGG 8137 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 ||| || ||||| || | | |||| | ||| ||||| | | || ||| | || || | Sbjct 8138 GACGGTGACGACGGCCTTCTTGACCTGCTTGCCGAGCTTGGCCTCGGCGGTGTCCTTGAG 8197 Query 7780 TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 ||||| || ||||| | || ||||| | | || ||||| ||| | |||||| Sbjct 8198 CTTGGTGAGGACCATAGCCGAGATCTCGGCGGGCGAGAACTGCTTCTTCTCACCG 8252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635124590908560