Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq985 104 3e-17 seq100 87.8 2e-12 >seq985 Length=76026 Score = 104 bits (114), Expect = 3e-17 Identities = 475/740 (64%), Gaps = 19/740 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || |||| ||||| || || || | || | Sbjct 19072 CCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCACGGACCCGACATCAAGCGTGCT 19013 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || |||||| | | || |||| ||||| | || || || || Sbjct 19012 ATCGAGACCTACAACTTGATGTCGGAGCGCTAC-TTCACTCACGCGTCGCCCACGCTGTT 18954 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || || ||| | || || ||||| | | | |||| || Sbjct 18953 CAACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGCAGGACGA 18894 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| |||| ||| |||| || || | ||||| ||| || || Sbjct 18893 CTCGATCGAAGGCATCTACGACACGCTCAAGACTTGCGCGCTCATCTCCAAGACTGCGGG 18834 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGAGGT-ACA 111908 || ||||| | || || | || | || | | || ||||| | | || || Sbjct 18833 CGGGATCGGTCTTTCGATTCACAACATCCGCGCGACCG-GT-TCGTACATCGCGGGCACG 18776 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || | || | || || | || ||||| ||||| || ||| ||| ||||| || Sbjct 18775 AACGGCTACTCGAACGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCGCGTTAC 18716 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||||| || ||| | | || | |||| |||| |||||||| ||| Sbjct 18715 GTGGACCAAGGAGGCAATAAGCGACCC---GGCGCGTTCGCGATCTACCTTGAGCCGTGG 18659 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 |||||||| ||| | || ||||| || | || ||||| || | || || | || Sbjct 18658 CACGCGGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAAGAAGAAGTCCGC 18599 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 || || ||||||| ||| || ||||| || || ||||||||| | | || ||| || Sbjct 18598 GCGCGAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTCTTCATGGAACGCGTCGAGCAG 18539 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | | | | ||| | || || || || | | | || ||||| ||| ||| | | || Sbjct 18538 AACGCCGAGTGGCCGCTGTTCTGCCCCGCCGAAGCGCCCGGCCTCCACGAGGTCTACGGC 18479 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGGT 112261 || ||||| || || | | ||||||||| | || |||| || | ||| ||| | Sbjct 18478 GACGAGTTCAGGGCGCTTTTCGAGAAGTACGAGAAGGAGGGTCGCGCCA-AGCGCACGAT 18420 Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | || || || | ||||| | || |||||| | | || ||||| || | || | Sbjct 18419 CTCGGC-GCAGAAGCTGTGGTACGCCATTCTCGAAGCCCAGGTTGAGACGGGCAATCCCT 18361 Query 112321 ATATGCTTTACAAAGACGCC 112340 ||||| ||||| |||||| Sbjct 18360 TCATGCTCTACAAGGACGCC 18341 >seq100 Length=52976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 ||||| || || || | ||||| || || ||||||||| |||| | | | | | Sbjct 52779 ACAGTCCCCTGCATCAAGAAGAAGGCCGACTGGGCTATGCGGTGGATC--TCGGACGACC 52836 Query 102168 CGTTC--CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 || | ||||| ||| || || |||| || || || ||||| ||||||||||| | Sbjct 52837 GGTCCATCTTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGG 52896 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | || ||| | | || | |||||||||||||| ||||||||||| |||||| ||||| Sbjct 52897 GCTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCACCTTCT 52956 Query 102286 C 102286 | Sbjct 52957 C 52957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734376904480