Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq985 129 7e-25 >seq985 Length=76026 Score = 129 bits (142), Expect = 7e-25 Identities = 518/806 (64%), Gaps = 21/806 (3%) Strand=Plus/Plus Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || ||||||||||||||| |||| | |||||||| ||| | | |||||| || | | Sbjct 18342 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATGGCGTAC 18401 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 |||| | || ||| | | | || ||||| || |||||| ||||||||| | | Sbjct 18402 CACAGCTTCTGCGCCGAGATCGTGCGC-TTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 18460 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 || || ||||| || || | ||| ||| || || || | | | || ||||| Sbjct 18461 AAGCGCCCTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGCGCTTCGGCGGGGCAGAA 18520 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 || | ||| | | || ||| || || | |||||| ||||| || |||||||| | Sbjct 18521 CAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCACAGCGC 18580 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 | ||||| |||| || | ||||| | || ||||| || | || ||||| Sbjct 18581 GAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 18640 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACG 106938 || | ||| ||||||||||| |||||||| |||| |||| | || ||| | Sbjct 18641 GTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTATT 18700 Query 106939 CCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACC 106998 || |||| | || || ||||| ||| ||| || ||||| ||||| || | || || Sbjct 18701 GCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGCC 18760 Query 106999 ATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATG 107056 | || | || || || ||| ||| ||||| | || || | | || | || Sbjct 18761 GTTCGAGTAGCCGTTCGTGCCCGCGATGTACGA-----ACCGG-TCGCGC-GGAT-GTTG 18812 Query 107057 TGCATC------CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110 || ||| || || || || || ||| ||||| |||| || | | || || Sbjct 18813 TGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTG 18872 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 | ||||| || | ||| ||||| |||| ||| || |||||||| || | ||| Sbjct 18873 TCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGC 18932 Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 107230 || || ||||| || ||||| || || || | |||||| |||| | | ||| Sbjct 18933 GGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGAC 18992 Query 107231 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACA 107290 ||| || ||| ||||| | || | ||||| ||||||||||||| ||| || Sbjct 18993 ATCAAGTTGTAGGTCTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACGGCAACG 19052 Query 107291 CGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTC 107350 ||||| | ||||| || || ||| | |||| |||| ||| | || || Sbjct 19053 CGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTGCCGTCGATCCGCAGCAGGTACGAG 19112 Query 107351 TTCTCAAGGGTTTTGAGACCAAAGTA 107376 ||| || ||||||| ||| ||||| Sbjct 19113 CGCTCGAGAGTTTTGAAACCGAAGTA 19138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973174498160