Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq381 96.9 2e-15 seq544 82.4 5e-11 >seq381 Length=90481 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| || ||||| ||| | || | || || ||||| || |||||||| Sbjct 92 TCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 151 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| |||||| Sbjct 152 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 211 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| || || || || ||||| || ||||| ||| Sbjct 212 TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACA 271 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 272 AAGATTTGCAT 282 >seq544 Length=109881 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| | || | || || ||||| || |||||||| Sbjct 82627 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 82686 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 82687 ATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 82746 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 | |||| || | ||| || |||| ||| || || || |||||||| Sbjct 82747 TCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAG 82796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629509007952