Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq985 131 3e-25 seq100 120 6e-22 seq64 105 1e-17 >seq985 Length=76026 Score = 131 bits (144), Expect = 3e-25 Identities = 213/306 (70%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| ||||| |||| |||||||||| ||| ||||| | | | || || Sbjct 18554 CATGAAGAGGTCGGGGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTT 18613 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || ||| ||||| || || || ||||| ||||||||||||||||||||||| | ||| Sbjct 18614 GCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTA 18673 Query 213941 GATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTT 213997 ||| || || ||||| | || | ||||| || |||||||| | ||| |||| Sbjct 18674 GATCGCGAACGCGCCGGGTCGCTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTT 18733 Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057 ||||| ||| || | || || | ||||| || | ||||| || ||||| || ||||| Sbjct 18734 GAAGACGCGGAGCATAGGCACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGA 18793 Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 |||| || | | |||| || || || || || || || || ||||||||| | Sbjct 18794 ACCGGTCGCGCGGATGTTGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAG 18853 Query 214118 GGCGCA 214123 ||||| Sbjct 18854 CGCGCA 18859 >seq100 Length=52976 Score = 120 bits (132), Expect = 6e-22 Identities = 134/176 (76%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 48179 GAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG 48238 |||||| |||||| ||||||| || | || ||||||||||| || | ||||| ||| Sbjct 52957 GAGAAGGTGAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAG 52898 Query 48239 CCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA---A 48295 || ||||||||||||||||| || || ||||||||| || | || || ||||| | Sbjct 52897 CCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACC-AAAGATGGA 52839 Query 48296 GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || || ||| |||||||| | |||||||| ||||||||||||||||| || Sbjct 52838 CCGGTC--GTCCGAGATCCACCGCATAGCCCAGTCGGCCTTCTTCTTGATGCAGGG 52785 >seq64 Length=12022 Score = 105 bits (116), Expect = 1e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | ||| | || |||||||| || || | |||||| || || ||||| || Sbjct 6153 CCGGGCATCAGCCCGCGCTTCTTGAGCCAAAAGATGGACGCGAACGACCCGGAGAAAAAT 6094 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || ||||||||| |||| | || ||||| || ||| || ||| Sbjct 6093 ATGCCCTCGACCGCTGCGAACGCGATGAGTCGTTCGCCGAACACTGCCTTCGGATCAGAG 6034 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| | ||||||||| || |||||||||||||| || Sbjct 6033 ATCCATCGCAACGCCCAGTCGGCTTTCTTCTTGATGCAAGG 5993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931520759938560