Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq985 203 6e-47 seq243 89.7 1e-12 seq100 84.2 4e-11 >seq985 Length=76026 Score = 203 bits (224), Expect = 6e-47 Identities = 545/820 (66%), Gaps = 25/820 (3%) Strand=Plus/Plus Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||||| ||||||||||||||||| |||||| ||| ||||| | ||| || | ||||| Sbjct 18336 TTGGCGGCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATG 18395 Query 221879 TTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 || ||| || | |||| || | ||| | |||| | |||||| ||| || || Sbjct 18396 GCGTACCACAGCT-TCTGCGCCGAGATCGTGCGCTTGGCGCGACCCTC---CTTCTCGTA 18451 Query 221938 C--CCGGTATAGAGCA-TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994 | | | | || || || |||| || ||||| |||||| ||||| || | | | Sbjct 18452 CTTCTCGAAAAGCGCCCTG---AACTCGTCGCCGTAGACCTCGTGGAGGCCGGG-CGCTT 18507 Query 221995 -GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCG 222053 |||||| || | ||| ||| | ||| | | ||| | | |||||||||||| | Sbjct 18508 CGGCGGGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGG 18567 Query 222054 GGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCC 222113 ||||||||||||| ||||| |||| | || || || ||||| ||| || | Sbjct 18568 GGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGC 18627 Query 222114 TCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGC 222173 || || | || || || ||||| |||||||||||||| || |||| || | |||| Sbjct 18628 GGAGGTCGAGGAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGC 18687 Query 222174 CGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGG 222233 |||||||||| ||||| || || ||||| | | || |||||||| ||| || Sbjct 18688 CGGGTCGCTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCA 18747 Query 222234 TCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA 222293 | || || | ||||| || ||||| |||||| ||||||| |||| || | | Sbjct 18748 TAGGCACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGGA 18807 Query 222294 GGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 ||| || | ||||| || || || || ||||| | ||||| |||||| Sbjct 18808 TGTTGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGA 18867 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 | ||||| |||||| || || ||||| |||| | | | | || || || ||||| | Sbjct 18868 GCGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGA 18927 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 || | | || || || |||||| ||||||||||| ||||| || ||||||| | Sbjct 18928 GTTGCGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCT 18987 Query 222474 TAGACATCAGATCGTACGTCTC--TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCAT 222531 ||||||| | ||| ||||| || || || ||||| | ||||| || | Sbjct 18988 CCGACATCAAGTTGTAGGTCTCGATAGCACGCT--TGATGTCGGGTCCGTGGATGCCGAC 19045 Query 222532 GGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC----CCTTGGAGCTGGAGA 222587 ||| | |||| ||||| ||| || | |||| | || || | || | | | Sbjct 19046 GGCAACGCGCATGAGCATGTGCTGAGGACGCTCCGC--CACTTTGCCGTCGATCCG--CA 19101 Query 222588 GCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 |||||||||| || ||||| ||||| || |||||||| Sbjct 19102 GCAGGTACGAGCGCTCGAGAGTTTTGAAACCGAAGTAGTT 19141 >seq243 Length=9243 Score = 89.7 bits (98), Expect = 1e-12 Identities = 207/318 (65%), Gaps = 5/318 (2%) Strand=Plus/Plus Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||||||||||| | |||||||||||||||| || ||||||||||| |||| | || Sbjct 65 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 124 Query 26044 GGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTG 26103 || | | || ||| | || || ||| | | |||||| ||||| || Sbjct 125 CACCTCGAACGCCG---ACCGCACCCCGACACGGTCGAGCGCATCATCCGCGAGGCGGTC 181 Query 26104 GAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAAC 26163 | ||||||| | ||||| | | ||||||||| | Sbjct 182 GCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATCGGCATGAACT-C 240 Query 26164 AGAC-TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACT 26222 ||| ||||| |||| ||||| |||| ||| ||||||| |||| | ||| || Sbjct 241 GGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTCGGCAA 300 Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 || | | |||| || | |||||||||||||||||||| | || ||| |||| || Sbjct 301 CGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATCTCGATGGAGGG 360 Query 26283 GAAGACCAACTTCTTTGA 26300 |||||||||||||| || Sbjct 361 CAAGACCAACTTCTTCGA 378 >seq100 Length=52976 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/154 (74%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 25803 GCACA-TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGA 25861 ||||| | ||| ||||||||| |||||| ||||| ||| ||||||| | | | || Sbjct 52777 GCACAGTCCCCTGCATCAAGAAGAAGGCCGACTGGGCTATGCGGTGGATCT-CGGAC-GA 52834 Query 25862 GCGCTACGT--TTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAG 25919 || | | | |||| || || ||||| || || || || || ||||||||||| ||| Sbjct 52835 CCGGTCCATCTTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTC 52894 Query 25920 CGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || ||||| || ||||||||||||||||| || Sbjct 52895 GGGCTCGTTCGCCTCCATCTTCTGGCTCAAGAAG 52928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928832794680960