Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq682 89.7 6e-13 seq286 89.7 6e-13 >seq682 Length=96692 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 177557 TTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCT 177616 |||| ||||||| | || | ||| ||||| |||||||||| ||| | || || | || Sbjct 91037 TTTCGACAAACTCGCGGACCGGGTGGGTCTCGCCCGTCGCGAGGACAAAGTCGTCCGGCT 90978 Query 177617 CTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTC 177676 | || || || |||||| |||||||| | || || ||||| ||| || |||||||| | Sbjct 90977 CGTCCTGCTGCAGCATGCGCCACATGCCCTCGACGTAGTCACGGGCGTGGCCCCAGTCAC 90918 Query 177677 TGGCAGCGTTGAGGTTACCGAG 177698 |||| |||||||||||| Sbjct 90917 GCTTGGCGTCGAGGTTACCGAG 90896 >seq286 Length=50606 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||||| |||||| | | |||| ||| || || |||||||| ||| Sbjct 25768 GGAGCCAAGATCCCCCGCGGCGCCATCTTGTCGGGCCCGCCCGGAACCGGAAAGACGCTC 25709 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394 |||||| ||| | ||| || ||| | ||||| ||| || | || ||| | | | Sbjct 25708 CTCGCCAAAGCGACCGCAGGCGAAGCCGGCGTCCCTTTCTTCTCCGT-CTCGGGTTCCGA 25650 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||| ||||||||||| || || || || | |||| ||||| || |||| ||| Sbjct 25649 GTTTGTCGAGATGTTTGTCGGAGTCGGCGCGAGTCGGGTCCGCGACCTGTTTG----CGC 25594 Query 175455 CCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG 175509 ||| || | || || || |||| || || |||||||| ||| | |||||| Sbjct 25593 TCGCCAAGAAGAACGCGCCGGCGATCATCTTTATCGACGAGATTGACGCGATCGGCAAG 25535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596561889337920