Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq851 223 5e-53 seq381 188 9e-43 seq544 156 6e-33 seq236 102 1e-16 >seq851 Length=36452 Score = 223 bits (246), Expect = 5e-53 Identities = 714/1100 (65%), Gaps = 12/1100 (1%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 || || || || ||||| ||||| | | |||||||||||||| || || | | | | Sbjct 5227 CCGGAGGAGATCTCGTCGATGGTCCTCCTCAAGATGAAGGAGACGGCCGAGGCATACCTC 5286 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || || | | || || || || || || || ||||||| || || || || Sbjct 5287 GGAGGCACGGTCAGCAACGCCGTCGTCACCGTCCCGGCCTACTTCAACGACTCGCAGCGT 5346 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 |||||||| |||||||| | | | || |||| || ||| || | || ||||| || Sbjct 5347 CAGGCGACCAAGGACGCCGGTACCATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAG 5406 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || || || || |||||||| || | || || || || Sbjct 5407 CCGACCGCCGCCGCGATCGCGTACGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTC 5466 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | || || || | || || || ||||| || ||||| || |||| || || | || Sbjct 5467 CTCATTTTCGACTTGGGCGGCGGCACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGC 5526 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCA 195991 || ||||| || ||||| || || ||||| || || || || ||||| || || || Sbjct 5527 ATCTTCGAGGTCAAGGCCACCGCCGGTGACACCCACCTCGGCGGTGAGGACTTTGACAAC 5586 Query 195992 CGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGA 196051 || || || || || | | |||||| || ||||| ||||| || | | Sbjct 5587 CGCCTCGTCACCCACTTCTGCGCCGAGTTCAAGCGCAAGAACAAGAAGGACCTCACGTCC 5646 Query 196052 AATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCT 196111 || | | || || || || || | || || || || || ||||| || || || || Sbjct 5647 AACGCCCGCGCCCTCCGCCGTCTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTGTCG 5706 Query 196112 TCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACA 196171 || | || || || | | ||||| || ||| | || || || || |||||||| || Sbjct 5707 TCGGCCGCCCAGACCACTATCGAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACC 5766 Query 196172 ACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAA 196231 | || |||||||| ||||| || ||| | | | || ||||| | ||||| Sbjct 5767 TCGATCACCCGTGCCCGTTTCGAGGAGCTCTGCGCCGACTTGTTCCGCGGCACCATGGAG 5826 Query 196232 CCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTC 196291 || || || | || || || ||| | ||||| || ||| ||| | || |||||| Sbjct 5827 CCGGTCGAGAAGGTCCTCCGCGACTCGAAGATCGACAAGCAGTCGGTCAACGAGATTGTC 5886 Query 196292 CTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTT-TCT-AG-CTTCTTC 196348 || || || || || |||||||| ||| | || |||| ||| ||| || ||| ||| Sbjct 5887 CTCGTCGGCGGTTCGACCCGTATCCCGC-GTGTC--CAGAAGCTCGTCTCAGACTTTTTC 5943 Query 196349 AATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCC 196408 || || || ||||| ||||||||||||| || || || || || || || ||| Sbjct 5944 AACGGCAAGGAGCCCAACAAGTCGATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCC 6003 Query 196409 GTTCAGGCTGCTATTCTCTCAGGTGTTGACA---ATAATAACGTCCAAGATCTTCTGCTA 196465 || ||||| || || ||| | || |||| | || ||| || || || || Sbjct 6004 GTCCAGGCCGCCATCCTCACCGG---CGACACGTCCGAGAAGACCCAGGACCTCCTCCTC 6060 Query 196466 CTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATT 196525 || || || || || | || ||| | || || || || ||||| ||||| || | Sbjct 6061 CTCGACGTCGCCCCGCTCTCGACCGGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTC 6120 Query 196526 ATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGAT 196585 || | ||||| || | ||||| |||||| | ||| || || || |||| Sbjct 6121 ATCCCCCGCAACACGACCGTCCCGACCAAGAAGTCCGAGACCTTCTCGACCTACGCCGAC 6180 Query 196586 AATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAAC 196645 || || || || || | || || || || || || || || |||| | ||||| ||| Sbjct 6181 AACCAGCCGGGCGTCCTCATCCAGGTCTACGAGGGCGAGCGTGCCCGCACCAAGGACAAC 6240 Query 196646 CATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAG 196705 | || || |||| ||||| | |||| || || | || ||| | ||||| || ||| Sbjct 6241 AACCTCCTCGGAAAGTTCGAGCTCTCGGGCATCCCCCCCGCGCCCCGTGGTGTCCCCCAG 6300 Query 196706 ATTAATGTTTGCTTCGATAT 196725 || | || |||||| || Sbjct 6301 ATCGAGGTCGTCTTCGACAT 6320 >seq381 Length=90481 Score = 188 bits (208), Expect = 9e-43 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || ||||| || || || || ||||| |||||||| ||||| || Sbjct 282 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCCTCG 223 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| |||||||| || || ||||| ||||| || ||||| ||| Sbjct 222 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 163 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || || ||||| || || || || |||||| | ||||||||| Sbjct 162 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 103 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | ||||||||||| || || ||||| || || Sbjct 102 ATCCAAAAGGAGTCGACCCTCCACCTCGTCCT 71 >seq544 Length=109881 Score = 156 bits (172), Expect = 6e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171881 CCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCA 171940 |||| || || || || |||||||||||||| |||||||| ||||| ||||| ||| ||| Sbjct 82798 CCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCA 82739 Query 171941 AAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTG 172000 | |||||||| || || ||||| ||||| || ||||| ||||| || || || ||||| | Sbjct 82738 AGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCG 82679 Query 172001 GTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTC 172060 | || ||||| || || || || || || | || |||||| | || |||||||| || | Sbjct 82678 GCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCC 82619 Query 172061 TACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | ||||| || || | | || |||||| Sbjct 82618 TCCACCTCGTCCTCCGCTTGCGCGGTGGT 82590 >seq236 Length=10160 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 171960 GGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGG 172019 ||| ||||| || ||||| ||||| || || || ||||| || || ||||| || || || Sbjct 10160 GGAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGG 10101 Query 172020 ACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCT 172079 || |||||| | ||||||||| | ||||||||||| || || ||||| || || | || Sbjct 10100 CCGCACCCTCTCGGATTACAACATCCAAAAGGAGTCGACCCTCCACCTCGTCCTCCGCCT 10041 Query 172080 TCGGGGTGG 172088 ||| ||||| Sbjct 10040 TCGTGGTGG 10032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657853897128480