Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq985 118 1e-21 seq381 113 4e-20 seq544 87.8 2e-12 >seq985 Length=76026 Score = 118 bits (130), Expect = 1e-21 Identities = 384/588 (65%), Gaps = 29/588 (5%) Strand=Plus/Plus Query 139378 AGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCG 139437 |||| ||| || ||||| || |||||| |||||| || || || ||||||| ||| Sbjct 18522 AGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCACAGCGCG 18581 Query 139438 AACAGCAAATCGCGCGC-----CTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTT 139490 || | | || ||||| |||||| | | ||| || | | || | | || Sbjct 18582 AAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCG------TGGTTC-TTGCGGAGGTC 18634 Query 139491 AAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG 139550 ||||| || || | ||| |||||||| || || || ||||| || | ||||| || Sbjct 18635 GAGGAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCG 18694 Query 139551 TTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTC 139607 || ||| ||||| || |||| || | | || ||||| ||||| | ||| ||| | Sbjct 18695 CTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCAC 18754 Query 139608 CAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGACGTC 139664 | ||| ||| ||||| |||| |||| | || | | || |||| || Sbjct 18755 GATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTC---GCGCGGATGT- 18810 Query 139665 ATGTACATTGATG--CCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAA 139721 ||| || || ||||| ||||| || ||||| || | ||||| || | | Sbjct 18811 -TGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTG-AG 18868 Query 139722 TGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAG 139781 || ||||| || ||| || |||||||||||| ||||| || ||||| ||||| || Sbjct 18869 CGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAG 18928 Query 139782 TTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTT 139841 |||||| | || ||||| ||||| || || |||||| ||||| | | Sbjct 18929 TTGCGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTC 18988 Query 139842 CGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGA 139901 ||||||||| | ||| || ||||| || | | || || ||||||||| ||||| | Sbjct 18989 CGACATCAAGTTGTAGGTCTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACGGC 19048 Query 139902 GACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAT 139949 || ||||| ||||| || || || || ||||| ||| ||||| Sbjct 19049 AACGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTGCCGTCGAT 19096 >seq381 Length=90481 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| | || || || || ||||| || || |||||||| || || || Sbjct 285 ACCATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCC 226 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| ||||| || || || || ||||| Sbjct 225 TCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGAC 166 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || | ||||||||||| || ||||| ||||| | | | | || ||||| Sbjct 165 CAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTAC 106 Query 24881 AACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||||| ||||| || ||| Sbjct 105 AACATCCAAAAGGAGTCGACCCTCCAC 79 >seq544 Length=109881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || || || || || || ||||| || || | ||||||| | || | || || Sbjct 82796 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAG 82737 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||| ||||| || || || || ||||| || || ||| | ||||||||||| Sbjct 82736 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGC 82677 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || ||||| ||||| | | | || || || ||||| || ||||| ||||| || Sbjct 82676 AAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTC 82617 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| | || | || |||||||| || Sbjct 82616 CACCTCGTCCTCCGCTTGCGCGGTGG 82591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449891785073520