Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq985 228 8e-55 seq243 143 3e-29 seq381 125 7e-24 seq544 113 4e-20 seq64 104 2e-17 seq893 96.9 3e-15 >seq985 Length=76026 Score = 228 bits (252), Expect = 8e-55 Identities = 522/761 (69%), Gaps = 31/761 (4%) Strand=Plus/Plus Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA---AC 148997 ||||||||||| |||||| | || ||| || || ||||| | ||| | ||| || Sbjct 18342 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATGGCGTAC 18401 Query 148998 CGATGCAGGTCCTGCGC-GCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAA 149054 | ||| | |||||| | | | ||| ||| | ||||||||||| |||||| | Sbjct 18402 CA---CAGCTTCTGCGCCGAGATCGTGC-GCTTGGCGCGACCCTCCTTCTCGTACTTCTC 18457 Query 149055 GTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGG 149114 | | | ||| || |||| | ||||||||| |||| ||| ||||| | ||| ||||| Sbjct 18458 GAAAAGCGCC-CT-GAACTCGTCGCCGTAGACCTCGTGGAGGCCGGG-CGCTTCGGCGGG 18514 Query 149115 -CACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCA 149173 || | |||| |||| || ||| | | ||||| | ||| || || ||||| | ||| Sbjct 18515 GCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCA 18574 Query 149174 GAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTT 149233 |||||| | | |||||| ||||| | ||||| ||| ||| ||| |||| Sbjct 18575 CAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGGTC 18634 Query 149234 GAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG 149293 ||| | | ||| |||||||||||||||||||||| ||| | ||||| |||||| || Sbjct 18635 GAGGAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCG 18694 Query 149294 C---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTC 149350 | ||||| || ||||| |||| ||| || ||||||| || || || | |||||| | Sbjct 18695 CTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCAC 18754 Query 149351 AATGCCACTGGCAGT-GCCGTTAGT-AGAGCTA-ATGCGACTGCCGCGCGCTCGCACTTT 149407 ||||| | | ||| |||||| || || | | ||| ||| ||| || | || Sbjct 18755 GATGCCGTTCG-AGTAGCCGTTCGTGCCCGCGATGTACGA--ACCGGTCGCGCGGATGTT 18811 Query 149408 GTGCACGTTGACGCCGATGCCG-CCGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGC 149465 ||| | | ||||| ||| |||| || ||| |||||| ||||| |||| |||| Sbjct 18812 GTGAATCGAAAGACCGATCCCGCCCGCAGT-CTTGGAGATGAGCGCGCAAGTC-TTGAGC 18869 Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATT 149525 || ||||||||| ||||| |||| || |||||| | || ||||| || | | | Sbjct 18870 GTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGT 18929 Query 149526 TGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGG 149585 ||||| | || ||||| ||||| ||||| ||||| || || || || Sbjct 18930 TGCGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCC 18989 Query 149586 CTCATCATCTCGTACGACTCG--AGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 ||||| | ||| | |||| ||||||| | ||||| || |||||||| | || Sbjct 18990 GACATCAAGTTGTAGGTCTCGATAGCACGC--TTGATGTCGGGTCCGTGGATGCCGACGG 19047 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 | |||||||| ||||| ||||| || ||||||||||||||| Sbjct 19048 CAACGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTG 19088 >seq243 Length=9243 Score = 143 bits (158), Expect = 3e-29 Identities = 228/322 (71%), Gaps = 9/322 (3%) Strand=Plus/Minus Query 120371 TCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGC 120430 |||| || ||||| || |||||||||||||| || ||| |||||| |||||||||||| Sbjct 380 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGG 321 Query 120431 TCGCGT--TAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTC 120488 |||| | |||| ||||| | ||| | | ||||||| ||||| || |||||||| Sbjct 320 TCGCCTTGTAAATCTTTTCG--TTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTC 263 Query 120489 AATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGT 120548 ||||||| ||||||| | || ||||||||| | || | || || | ||| || Sbjct 262 GATGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACGGGAAGCGCGTCGGT 203 Query 120549 GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG-GCGAGCATAGTGTGGCCGG 120607 | ||||| | ||| || | |||||||| || ||| || | | |||| | | Sbjct 202 CAGGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCG-ACCGTGTCGGGGT 144 Query 120608 GCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCT 120667 || | |||||| | ||| | || ||||| |||||||| ||||| || |||| Sbjct 143 GCGGTCGGCGTTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCT 87 Query 120668 CGTCGCGCGATATCAGCTCGTT 120689 |||||||||| || |||||||| Sbjct 86 CGTCGCGCGAGATGAGCTCGTT 65 >seq381 Length=90481 Score = 125 bits (138), Expect = 7e-24 Identities = 152/206 (74%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| || || || |||||||| | ||| |||||||||||||||||| Sbjct 85 GGTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 144 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 145 GGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 204 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| | || ||| || |||| |||| || || || ||||| || Sbjct 205 GACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTACCCGTCAGGGT 264 Query 133643 TTTTACGAAAATCTGCATGGCTTATT 133668 || || || || ||||||| ||||| Sbjct 265 CTTGACAAAGATTTGCATGG-TTATT 289 >seq544 Length=109881 Score = 113 bits (124), Expect = 4e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 82620 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 82679 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 82680 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 82739 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | || | |||||||| | ||| || |||| ||||| || ||||| || || Sbjct 82740 GACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAG 82796 >seq64 Length=12022 Score = 104 bits (114), Expect = 2e-17 Identities = 222/326 (68%), Gaps = 17/326 (5%) Strand=Plus/Minus Query 120371 TCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGC 120430 |||| || ||||| || || ||||||||||| || | ||| | ||||| ||||| Sbjct 6544 TCTCGAAGAAGTTGGTCTTTCCCTCCATCGAGATCAGCTCCATCCAATCGAAAGGGTTCT 6485 Query 120431 TCGCGTT--AAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTC 120488 || ||| | || | ||| | || | | |||||||| |||||||| |||||||| Sbjct 6484 CCGTGTTGTAGAGCTTGTCG--TTCCCGAGCGCGACGAGCAGCCGGTCCGCCACAAACTC 6427 Query 120489 AATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGT 120548 ||||||| |||||| || || |||||| || | ||| || || |||| || || Sbjct 6426 GATGTACTGGCACATCAACGTCGAGTTCATACCGATCAAGGCGACGGGCAGTGCGTCGGT 6367 Query 120549 GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTG-TG----G 120603 || ||||||||||| || || || || || || || ||| ||| | | || | Sbjct 6366 CAAGAACTCCTTCTCGATCTCGACGGCTTCGGCGATGAT-GCGTGCAACGCGATGAGGAG 6308 Query 120604 CCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGG 120663 | || | | |||||| | | | || ||||| |||||||| ||||| ||| Sbjct 6307 CGGGACGAC----GTTCGAGGTGAG---AAAAGAGGAGGCAGGCAAAGTCGGTGTGGAGG 6255 Query 120664 CCCTCGTCGCGCGATATCAGCTCGTT 120689 || ||||| ||||| || |||||||| Sbjct 6254 CCTTCGTCACGCGAGATGAGCTCGTT 6229 >seq893 Length=83276 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 39248 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 39189 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 39188 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 39129 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||| | | ||| || || | ||||| Sbjct 39128 GACGTTGTCGATCGTGTCCGACGACTCGACCTCAAGGGTGA 39088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414551786160