Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq985 228 8e-55
seq243 143 3e-29
seq381 125 7e-24
seq544 113 4e-20
seq64 104 2e-17
seq893 96.9 3e-15
>seq985
Length=76026
Score = 228 bits (252), Expect = 8e-55
Identities = 522/761 (69%), Gaps = 31/761 (4%)
Strand=Plus/Plus
Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA---AC 148997
||||||||||| |||||| | || ||| || || ||||| | ||| | ||| ||
Sbjct 18342 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATGGCGTAC 18401
Query 148998 CGATGCAGGTCCTGCGC-GCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAA 149054
| ||| | |||||| | | | ||| ||| | ||||||||||| |||||| |
Sbjct 18402 CA---CAGCTTCTGCGCCGAGATCGTGC-GCTTGGCGCGACCCTCCTTCTCGTACTTCTC 18457
Query 149055 GTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGG 149114
| | | ||| || |||| | ||||||||| |||| ||| ||||| | ||| |||||
Sbjct 18458 GAAAAGCGCC-CT-GAACTCGTCGCCGTAGACCTCGTGGAGGCCGGG-CGCTTCGGCGGG 18514
Query 149115 -CACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCA 149173
|| | |||| |||| || ||| | | ||||| | ||| || || ||||| | |||
Sbjct 18515 GCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCA 18574
Query 149174 GAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTT 149233
|||||| | | |||||| ||||| | ||||| ||| ||| ||| ||||
Sbjct 18575 CAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGGTC 18634
Query 149234 GAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG 149293
||| | | ||| |||||||||||||||||||||| ||| | ||||| |||||| ||
Sbjct 18635 GAGGAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCG 18694
Query 149294 C---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTC 149350
| ||||| || ||||| |||| ||| || ||||||| || || || | |||||| |
Sbjct 18695 CTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCAC 18754
Query 149351 AATGCCACTGGCAGT-GCCGTTAGT-AGAGCTA-ATGCGACTGCCGCGCGCTCGCACTTT 149407
||||| | | ||| |||||| || || | | ||| ||| ||| || | ||
Sbjct 18755 GATGCCGTTCG-AGTAGCCGTTCGTGCCCGCGATGTACGA--ACCGGTCGCGCGGATGTT 18811
Query 149408 GTGCACGTTGACGCCGATGCCG-CCGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGC 149465
||| | | ||||| ||| |||| || ||| |||||| ||||| |||| ||||
Sbjct 18812 GTGAATCGAAAGACCGATCCCGCCCGCAGT-CTTGGAGATGAGCGCGCAAGTC-TTGAGC 18869
Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATT 149525
|| ||||||||| ||||| |||| || |||||| | || ||||| || | | |
Sbjct 18870 GTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGT 18929
Query 149526 TGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGG 149585
||||| | || ||||| ||||| ||||| ||||| || || || ||
Sbjct 18930 TGCGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCC 18989
Query 149586 CTCATCATCTCGTACGACTCG--AGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643
||||| | ||| | |||| ||||||| | ||||| || |||||||| | ||
Sbjct 18990 GACATCAAGTTGTAGGTCTCGATAGCACGC--TTGATGTCGGGTCCGTGGATGCCGACGG 19047
Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684
| |||||||| ||||| ||||| || |||||||||||||||
Sbjct 19048 CAACGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTG 19088
>seq243
Length=9243
Score = 143 bits (158), Expect = 3e-29
Identities = 228/322 (71%), Gaps = 9/322 (3%)
Strand=Plus/Minus
Query 120371 TCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGC 120430
|||| || ||||| || |||||||||||||| || ||| |||||| ||||||||||||
Sbjct 380 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTGG 321
Query 120431 TCGCGT--TAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTC 120488
|||| | |||| ||||| | ||| | | ||||||| ||||| || ||||||||
Sbjct 320 TCGCCTTGTAAATCTTTTCG--TTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTC 263
Query 120489 AATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGT 120548
||||||| ||||||| | || ||||||||| | || | || || | ||| ||
Sbjct 262 GATGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACGGGAAGCGCGTCGGT 203
Query 120549 GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG-GCGAGCATAGTGTGGCCGG 120607
| ||||| | ||| || | |||||||| || ||| || | | |||| | |
Sbjct 202 CAGGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCG-ACCGTGTCGGGGT 144
Query 120608 GCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCT 120667
|| | |||||| | ||| | || ||||| |||||||| ||||| || ||||
Sbjct 143 GCGGTCGGCGTTCGAGGTGCG---AGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCT 87
Query 120668 CGTCGCGCGATATCAGCTCGTT 120689
|||||||||| || ||||||||
Sbjct 86 CGTCGCGCGAGATGAGCTCGTT 65
>seq381
Length=90481
Score = 125 bits (138), Expect = 7e-24
Identities = 152/206 (74%), Gaps = 1/206 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| || || || |||||||| | ||| ||||||||||||||||||
Sbjct 85 GGTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 144
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||| |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 145 GGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 204
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | |||||| | || ||| || |||| |||| || || || ||||| ||
Sbjct 205 GACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTACCCGTCAGGGT 264
Query 133643 TTTTACGAAAATCTGCATGGCTTATT 133668
|| || || || ||||||| |||||
Sbjct 265 CTTGACAAAGATTTGCATGG-TTATT 289
>seq544
Length=109881
Score = 113 bits (124), Expect = 4e-20
Identities = 131/177 (74%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 82620 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 82679
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||| |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 82680 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 82739
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639
|| | || | |||||||| | ||| || |||| ||||| || ||||| || ||
Sbjct 82740 GACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAG 82796
>seq64
Length=12022
Score = 104 bits (114), Expect = 2e-17
Identities = 222/326 (68%), Gaps = 17/326 (5%)
Strand=Plus/Minus
Query 120371 TCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGC 120430
|||| || ||||| || || ||||||||||| || | ||| | ||||| |||||
Sbjct 6544 TCTCGAAGAAGTTGGTCTTTCCCTCCATCGAGATCAGCTCCATCCAATCGAAAGGGTTCT 6485
Query 120431 TCGCGTT--AAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTC 120488
|| ||| | || | ||| | || | | |||||||| |||||||| ||||||||
Sbjct 6484 CCGTGTTGTAGAGCTTGTCG--TTCCCGAGCGCGACGAGCAGCCGGTCCGCCACAAACTC 6427
Query 120489 AATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGT 120548
||||||| |||||| || || |||||| || | ||| || || |||| || ||
Sbjct 6426 GATGTACTGGCACATCAACGTCGAGTTCATACCGATCAAGGCGACGGGCAGTGCGTCGGT 6367
Query 120549 GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTG-TG----G 120603
|| ||||||||||| || || || || || || || ||| ||| | | || |
Sbjct 6366 CAAGAACTCCTTCTCGATCTCGACGGCTTCGGCGATGAT-GCGTGCAACGCGATGAGGAG 6308
Query 120604 CCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGG 120663
| || | | |||||| | | | || ||||| |||||||| ||||| |||
Sbjct 6307 CGGGACGAC----GTTCGAGGTGAG---AAAAGAGGAGGCAGGCAAAGTCGGTGTGGAGG 6255
Query 120664 CCCTCGTCGCGCGATATCAGCTCGTT 120689
|| ||||| ||||| || ||||||||
Sbjct 6254 CCTTCGTCACGCGAGATGAGCTCGTT 6229
>seq893
Length=83276
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 39248 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 39189
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||| |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 39188 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 39129
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| | || | |||||| | | ||| || || | |||||
Sbjct 39128 GACGTTGTCGATCGTGTCCGACGACTCGACCTCAAGGGTGA 39088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483414551786160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |