Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq985 206 4e-47 seq64 163 4e-34 seq243 161 1e-33 seq220 131 2e-24 seq100 114 2e-19 seq93 102 1e-15 seq558 89.7 7e-12 seq548 89.7 7e-12 seq113 89.7 7e-12 >seq985 Length=76026 Score = 206 bits (228), Expect = 4e-47 Identities = 220/288 (76%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| | ||||| ||| ||| |||||||||| || || ||||| || || | Sbjct 18994 ATGTCGGAGCGCTACTTCAC-TCACGCGTCGCCCACGCTGTTCAACGCCGGTACCCCCCA 18936 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 |||||| ||||| ||||| || | |||| ||| ||| |||||||| |||||||| Sbjct 18935 CCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGCAGGACGACTCGATCGAAGGCATCTA 18876 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||||||| |||||||||||||||||| | || ||||| |||||| || | Sbjct 18875 CGACACGCTCAAGACTTGCGCGCTCATCTCCAAGACTGCGGGCGGGATCGGTCTTTCGAT 18816 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | ||||| | || | ||| | |||||||| |||||| | || |||||| | Sbjct 18815 TCACAACATCCGCGCGACCGGTTCGTACATCGCGGGCACGAACGGCTACTCGAACGGCAT 18756 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||| ||||| ||||| || ||| |||||||||| ||||| ||||| Sbjct 18755 CGTGCCTATGCTCCGCGTCTTCAACAACACGGCGCGTTACGTGGACCA 18708 Score = 98.7 bits (108), Expect = 1e-14 Identities = 154/218 (71%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 261806 GGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTCATCAACTGGCTGGACCTC 261865 ||||| || || |||||| || ||||||||||| ||| || || ||| || |||||| Sbjct 18688 GGCGCGTTCGCGATCTACCTTGAGCCGTGGCACGCGGACATCTTCGACTTCCTCGACCTC 18629 Query 261866 AAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGCGATCTCTTTTACGGCCTG 261925 |||||||||||||| | |||| ||||||| || ||||| | || ||| Sbjct 18628 CGCAAGAACCACGGCAA------AGAAGAAGTCCGCGCGCGAGACCTCTTCTTCGCGCTG 18575 Query 261926 TGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCG-CGACTGGTCGCTCTTTTG 261984 |||| |||||| || ||| ||| | | | | | || ||| ||| |||| || || Sbjct 18574 TGGATCCCCGACCTCTTCATGGAACGCGTCGAG-CAGAACGCCGAGTGGCCGCTGTTCTG 18516 Query 261985 CCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCG 262022 ||| |||| ||||||||||| ||||| ||| |||| Sbjct 18515 CCCCGCCGAAGCGCCCGGCCTCCACGAGGTCTACGGCG 18478 >seq64 Length=12022 Score = 163 bits (180), Expect = 4e-34 Identities = 170/219 (78%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||| ||| ||||||||||||||||| ||||| | | ||| | ||||| || || Sbjct 6328 ATCATCGCCGAAGCCGTCGAGATCGAGAAGGAGTTCTTGACCGACGCACTGCCCGTCGCC 6387 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | ||||| |||||| | || | | |||||||||||||| || ||| || || ||||| | Sbjct 6388 TTGATCGGTATGAACTCGAC-GTTGATGTGCCAGTACATCGAGTTT-GTGGCGGACCGGC 6445 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||||| |||||||| || | |||| |||| |||| ||||| ||| |||||| Sbjct 6446 TGCTCGTCGCGCTCGGGAACG-ACAAGCTCTACAACACGGAGAACCCTTTCGATTGGATG 6504 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| |||||||| | ||||| ||||||||||| |||||| Sbjct 6505 GAGCTGATCTCGATGGAGGGAAAGACCAACTTCTTCGAG 6543 >seq243 Length=9243 Score = 161 bits (178), Expect = 1e-33 Identities = 211/286 (74%), Gaps = 11/286 (4%) Strand=Plus/Plus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC----CGACGTGCC 1456515 ||||||||||| || |||| | || |||| ||| |||| | | |||| | Sbjct 101 GACTTTGCCTGCCTCCTCTTCTCGCACCTCG--AAC--GCCGACCGCACCCCGACACGGT 156 Query 1456516 CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCC 1456575 | ||| |||||| |||||| |||| ||||||| ||||||| | | ||| |||| || Sbjct 157 CGAGCGCATCATCCGCGAGGCGGTCGCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCC 216 Query 1456576 GGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCC 1456635 || ||| |||||||||||| | | ||||||||||||||||| || ||| |||||| Sbjct 217 CGTCAAGCTGATCGGCATGAACTCGGAC-CTCATGTGCCAGTACATCGAGTTT-GTCGCC 274 Query 1456636 GACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCC 1456695 ||||| |||||| ||||||||| || | ||| ||| | || ||||||||||| Sbjct 275 GACCGGTTGCTCGTCGCGCTCGGCAACGAA-AAGATTTACAAGGCGACCAACCCGTTCGA 333 Query 1456696 ATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 | ||||| |||||||| | ||||||||||||||||| |||||| Sbjct 334 CTTTATGGACATGATCTCGATGGAGGGCAAGACCAACTTCTTCGAG 379 >seq220 Length=39508 Score = 131 bits (144), Expect = 2e-24 Identities = 206/294 (70%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1817484 GTCCATGACCAGGCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCAC 1817543 |||| ||| | || |||| ||||||||||||||||||||| | | | ||| | | || Sbjct 1032 GTCCTGGACGATACCCATGACGGGCTTGTTGGCCTGCGGCGAGATGATGTTGCGCGGGAC 973 Query 1817544 GTTCATGGTGTGCGTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCACATGGAGGTTCAT 1817602 | ||| ||| ||||||||| | ||| | ||||| ||||| || | |||||| Sbjct 972 GGCGCAAATGTTGATCAACTCGGCGCGGGTCTCTTCCGACTGCGGCACGTGCAAGTTCAT 913 Query 1817603 CTCGTCGCCGTCAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGT 1817662 ||||||||||||||||||||| ||||| | |||||| | || ||||| ||| | ||| Sbjct 912 CTCGTCGCCGTCAAAGTCGGCGTTGTACGGCGACGTGACCGACAAGTTGAGCCGGAAGGT 853 Query 1817663 ACGGCCGGGCATGGGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTG 1817722 | |||||| || || |||| | ||| || | |||| || || || || Sbjct 852 CGAGTACGGCATGAGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAGCGACGGTTG 793 Query 1817723 CCGGTTCATCACCACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776 |||||| | || || ||||||| | ||||| |||||||| ||||||| Sbjct 792 CCGGTTGAACAAGACAATGTCGCCGTCCTTGAGGTGGCGCTCGACGATCCACCC 739 Score = 96.9 bits (106), Expect = 5e-14 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 1818078 GGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCG 1818137 ||||| |||||||| || |||| | ||| | ||||| | || ||||| |||||| Sbjct 602 GGCGTGACGCGCTCCGGGTAGGTCAAAGTCCTCGCGATCGAGAACGGGACGCCGACCTCG 543 Query 1818138 TCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTG 1818197 || | | | | |||||| | ||||||| | || |||| ||||| |||||||||| Sbjct 542 TCGAGCGCCAAGTTGGGGTCACCGGTGATGACAGTTCGGGCGGAAAAGTCGACGCGCTTG 483 Query 1818198 CCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCC 1818245 ||||| | |||||||| | || ||||| |||||||||| ||| || Sbjct 482 CCCATCAAGTTGCCGCGCAGCCGCCCCTCTTTGCCCTTGAGTCGCGCC 435 >seq100 Length=52976 Score = 114 bits (126), Expect = 2e-19 Identities = 121/156 (78%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGA 1456180 ||| |||||||||||||| ||| ||||||| ||| | || || ||||| || Sbjct 52796 GAAGAAGGCCGACTGGGCTATGCGGTGGATCTC---GGACGACCGGTCCATCTTTGGTGA 52852 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 || || |||| || ||||| |||||||||||||| ||||||||| ||| | |||| Sbjct 52853 ACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCCTCCAT 52912 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| ||||||||||||||||| |||||||| ||||| Sbjct 52913 CTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCT 52948 >seq93 Length=41911 Score = 102 bits (112), Expect = 1e-15 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 ||||||||||||||| ||||||| |||| ||||||| ||||||||||| || ||||| Sbjct 2900 CTGCTTGCCCATGGCACTCTGGTACGTGTTTCGCGGCGACTGGTTGTGGTCGGGGAACGG 2841 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGT 1601472 ||||||||||||||| ||| || || | ||||||| |||| |||||| Sbjct 2840 AATGATGGACGCGCAGATGCCGAGGATCATGGCGGGGTGGATCTCGCAGTGCGT 2787 >seq558 Length=13280 Score = 89.7 bits (98), Expect = 7e-12 Identities = 98/129 (76%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||||| ||||||||||| ||||||||||| ||||| || | | ||| Sbjct 274 TACTCGTCCTACATCTACAAGGTCCTCAAGCAGGTCCACCCGGACACTGGT-----ATC- 221 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| ||| | |||||||| ||||||||||| | || ||||||| | Sbjct 220 TCGAACAAGGCCATGCTCATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCC 161 Query 725019 ACCGAGGCC 725027 | |||||| Sbjct 160 TCGGAGGCC 152 >seq548 Length=51391 Score = 89.7 bits (98), Expect = 7e-12 Identities = 98/129 (76%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||||| ||||||||||| ||||||||||| ||||| || | | ||| Sbjct 36232 TACTCGTCCTACATCTACAAGGTCCTCAAGCAGGTCCACCCGGACACTGGT-----ATC- 36285 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| ||| | |||||||| ||||||||||| | || ||||||| | Sbjct 36286 TCGAACAAGGCCATGCTCATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCC 36345 Query 725019 ACCGAGGCC 725027 | |||||| Sbjct 36346 TCGGAGGCC 36354 >seq113 Length=68676 Score = 89.7 bits (98), Expect = 7e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 332926 GTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGC 332985 |||||| || ||||| ||||| ||||| || | | | |||||| || |||||||| Sbjct 4050 GTTGCACGCGAGGGCGAACCGGGTCGTGTTCGAGTACAGTTCCATCGTGCGGCGGAGGGC 3991 Query 332986 CTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045 || || || ||| ||| | ||||||| ||||||||||||| || |||||| ||||| Sbjct 3990 TTGCTGCGCGCCCGTCGTCATCGAGTCGGCTTCGTCGAGGATGACGAGCTTGTGCCGCCC 3931 Query 333046 GTGCGGCAG 333054 | |||| || Sbjct 3930 GAGCGGGAG 3922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177711468799508