Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq544 113 5e-20
seq985 107 2e-18
seq893 100 3e-16
>seq544
Length=109881
Score = 113 bits (124), Expect = 5e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| || || || ||||| || ||||||||||| || ||| | ||| |||
Sbjct 82609 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 82668
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| ||||| || | ||||||||| ||||| || ||||| || || || ||
Sbjct 82669 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 82728
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| ||| | ||||||||||| || || ||||| || || || ||
Sbjct 82729 ATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTG 82788
Query 134685 CCGGT 134689
|| ||
Sbjct 82789 CCCGT 82793
>seq985
Length=76026
Score = 107 bits (118), Expect = 2e-18
Identities = 298/451 (66%), Gaps = 7/451 (2%)
Strand=Plus/Minus
Query 7537 ATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATT 7596
||| ||||| || ||||| || ||| |||||||| ||||||| || || |||||
Sbjct 19096 ATCGACGGCAAAGTGGCGGAGCGTCCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATC 19037
Query 7597 CACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT 7656
||||| ||||| | || | || || ||| | ||||||| | | ||
Sbjct 19036 CACGGACCCGACATCAAGCGTGCTATCGAGACCTACAACTTGATGTCGGAGCGCTACTTC 18977
Query 7657 ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGT 7716
|| ||||| |||||||| |||| ||| || || | || ||| | || || ||
Sbjct 18976 ACTCACGCGTCGCCCACGCTGTTCAACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGC 18917
Query 7717 TTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTG 7775
|| | | ||||||| || ||| ||||| ||||| ||| ||||||| | || |||
Sbjct 18916 TTCCTCGTCACCATGCAGGACGACTCGATCGAAGGCATCTACGACACGCT-CAAGACTTG 18858
Query 7776 CGCCAATATTTCCAAATACGGCGG-CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCA 7834
||| || ||||| || |||| ||| || ||||| | || || | ||||| |
Sbjct 18857 CGCGCTCATCTCCAAG-ACTGCGGGCGGGATCGGTCTTTCGATTCACAACATCCGCGCGA 18799
Query 7835 ACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCG 7894
|||| ||||| | ||| ||||| | | | ||| | | ||| ||| | ||||
Sbjct 18798 CCGGTTCGTACATCGCGGGCACGAACGGCTACTCGAACGGCATCGTGCCTATGCTCCGCG 18739
Query 7895 TGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCCGCTG 7951
| ||||| ||| ||| ||| | || ||||| || || || ||| ||||| |
Sbjct 18738 TCTTCAACAACACGGCGCGTTACGTGGACCAAGGAGGCAATAAGCGACCCGGCGCGTTCG 18679
Query 7952 CCATCTATTTGGAGCCGTGGCACGCGGACAT 7982
| ||||| | ||||||||||||||||||||
Sbjct 18678 CGATCTACCTTGAGCCGTGGCACGCGGACAT 18648
>seq893
Length=83276
Score = 100 bits (110), Expect = 3e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| || || || ||||| || ||||||||||| | |||| | ||| |||
Sbjct 39259 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 39200
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| ||||| || | ||||||||| ||||| || ||||| || || || ||
Sbjct 39199 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 39140
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677
|| || ||||| ||| | ||||| ||||| || || || || || ||
Sbjct 39139 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCAAGGGTGAT 39087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505391867725680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |