Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq544 113 5e-20 seq985 107 2e-18 seq893 100 3e-16 >seq544 Length=109881 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| || ||| | ||| ||| Sbjct 82609 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 82668 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | ||||||||| ||||| || ||||| || || || || Sbjct 82669 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 82728 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||||||||| || || ||||| || || || || Sbjct 82729 ATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTG 82788 Query 134685 CCGGT 134689 || || Sbjct 82789 CCCGT 82793 >seq985 Length=76026 Score = 107 bits (118), Expect = 2e-18 Identities = 298/451 (66%), Gaps = 7/451 (2%) Strand=Plus/Minus Query 7537 ATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATT 7596 ||| ||||| || ||||| || ||| |||||||| ||||||| || || ||||| Sbjct 19096 ATCGACGGCAAAGTGGCGGAGCGTCCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATC 19037 Query 7597 CACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT 7656 ||||| ||||| | || | || || ||| | ||||||| | | || Sbjct 19036 CACGGACCCGACATCAAGCGTGCTATCGAGACCTACAACTTGATGTCGGAGCGCTACTTC 18977 Query 7657 ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGT 7716 || ||||| |||||||| |||| ||| || || | || ||| | || || || Sbjct 18976 ACTCACGCGTCGCCCACGCTGTTCAACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGC 18917 Query 7717 TTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTG 7775 || | | ||||||| || ||| ||||| ||||| ||| ||||||| | || ||| Sbjct 18916 TTCCTCGTCACCATGCAGGACGACTCGATCGAAGGCATCTACGACACGCT-CAAGACTTG 18858 Query 7776 CGCCAATATTTCCAAATACGGCGG-CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCA 7834 ||| || ||||| || |||| ||| || ||||| | || || | ||||| | Sbjct 18857 CGCGCTCATCTCCAAG-ACTGCGGGCGGGATCGGTCTTTCGATTCACAACATCCGCGCGA 18799 Query 7835 ACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCG 7894 |||| ||||| | ||| ||||| | | | ||| | | ||| ||| | |||| Sbjct 18798 CCGGTTCGTACATCGCGGGCACGAACGGCTACTCGAACGGCATCGTGCCTATGCTCCGCG 18739 Query 7895 TGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCCGCTG 7951 | ||||| ||| ||| ||| | || ||||| || || || ||| ||||| | Sbjct 18738 TCTTCAACAACACGGCGCGTTACGTGGACCAAGGAGGCAATAAGCGACCCGGCGCGTTCG 18679 Query 7952 CCATCTATTTGGAGCCGTGGCACGCGGACAT 7982 | ||||| | |||||||||||||||||||| Sbjct 18678 CGATCTACCTTGAGCCGTGGCACGCGGACAT 18648 >seq893 Length=83276 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| | |||| | ||| ||| Sbjct 39259 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 39200 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | ||||||||| ||||| || ||||| || || || || Sbjct 39199 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 39140 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || ||||| ||| | ||||| ||||| || || || || || || Sbjct 39139 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCAAGGGTGAT 39087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505391867725680