Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq985 132 6e-26 seq286 89.7 6e-13 >seq985 Length=76026 Score = 132 bits (146), Expect = 6e-26 Identities = 521/808 (64%), Gaps = 25/808 (3%) Strand=Plus/Plus Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || ||||||||||||||| |||| | |||||||| ||| | || |||||| || | | Sbjct 18342 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATGGCGTAC 18401 Query 111416 CAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 || | | || ||| | | | || ||||| || |||||| ||||||||| | | Sbjct 18402 CACAGCTTCTGCGCCGAGATCGTGCGC-TTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 18460 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 || || ||||| || || | ||| ||| || || || | | | || ||||| Sbjct 18461 AAGCGCCCTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGCGCTTCGGCGGGGCAGAA 18520 Query 111535 AAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 || | ||| | | | ||| ||| || || | |||||| ||||| || |||||||| Sbjct 18521 CAGCGGCCACT--CGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCACAGC 18578 Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 | | ||||| |||| || | ||||| | || ||||| || | || ||| Sbjct 18579 GCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGGTCGAGG 18638 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---A 111709 || || | ||| ||||||||||| |||||||| |||| |||| | || ||| | Sbjct 18639 AAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTA 18698 Query 111710 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 111769 || |||| | || || ||||| ||| ||| || ||||| ||||| || | || Sbjct 18699 TTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATG 18758 Query 111770 CCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGA 111827 || | || | || || || ||| ||| ||||| | || || | | || | Sbjct 18759 CCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGA-----ACCGG-TCGCGC-GGAT-GT 18810 Query 111828 TGTGCATC------CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 |||| ||| || || || || || ||| ||||| |||| || | | || | Sbjct 18811 TGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCG 18870 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | | ||||| || | ||| ||||| |||| ||| || |||||||| || | | Sbjct 18871 TGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTT 18930 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGG 112001 |||| || ||||| || ||||| || || || | |||||| |||| | | | Sbjct 18931 GCGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCG 18990 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 ||||| || ||| ||||| | || | ||||| ||||||||||||| || | Sbjct 18991 ACATCAAGTTGTAGGTCTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACGGCAA 19050 Query 112062 CCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGC 112121 | ||||||| ||||| ||| || ||| | |||| |||| ||| | || || Sbjct 19051 CGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTGCCGTCGATCCGCAGCAGGTACG 19110 Query 112122 TCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| || ||||||| ||| ||||| Sbjct 19111 AGCGCTCGAGAGTTTTGAAACCGAAGTA 19138 >seq286 Length=50606 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGG 11675 |||||| | ||| |||||||| || || |||| || || || | || ||| | Sbjct 25535 CTTGCCGATCGCGTCAATCTCGTCGATAAAGATGATCGCCGGCGCGTTCTTCTTGGCGAG 25594 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 || |||| || ||||| |||| | || || || || ||||||||||| ||||| | Sbjct 25595 CG----CAAACAGGTCGCGGACCCGACTCGCGCCGACTCCGACAAACATCTCGACAAACT 25650 Query 11736 TTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGG 11794 | | ||| || | || ||| ||||| | ||| || ||| | ||| ||||||| Sbjct 25651 CGGAACCCGAG-ACGGAGAAGAAAGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGG 25709 Query 11795 AGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || |||||||| || || ||| |||| | | |||||| |||||||||||||| || Sbjct 25710 AGCGTCTTTCCGGTTCCGGGCGGGCCCGACAAGATGGCGCCGCGGGGGATCTTGGCTCC 25768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023882686400