Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq985 174 2e-38 seq100 87.8 2e-12 >seq985 Length=76026 Score = 174 bits (192), Expect = 2e-38 Identities = 482/728 (66%), Gaps = 11/728 (2%) Strand=Plus/Plus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 || |||||||| |||||| | || | |||||||| |||| | |||||| || | | Sbjct 18342 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATGGCGTAC 18401 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 || | | || || || | | ||| ||||| || ||||| | ||||||||| | | Sbjct 18402 CACAGCTTCTGC-GCCGAGATCGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 18460 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 || || ||||| || || | |||| ||| || || || | | |||||||| Sbjct 18461 AAGCGCCCTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGCGCTTCGGCGGGGCAGAA 18520 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 || | ||| | | || ||| || || | |||||||||||| |||||||| ||||| Sbjct 18521 CAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCACAGCGC 18580 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 ||||||| || || ||| ||||||| | || || || || | || | || Sbjct 18581 GAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 18640 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 119185 ||| | ||| |||||||||||||| || ||||| | ||||| | || || | Sbjct 18641 GTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTATT 18700 Query 119186 ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 || | |||| || || | ||| ||| ||| || || || ||||| || | ||| || Sbjct 18701 GCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGCC 18760 Query 119246 ATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATG 119303 | || | ||| || || ||| ||| ||||| || | || | || | ||| || Sbjct 18761 GTTCGAGTAGCCGTTCGTGCCCGCGATGTACGA-AC-CGGTCGCGCGGATGTTGTGAATC 18818 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 | ||| || || || || ||| ||||| ||||||| | |||| || ||||| Sbjct 18819 GAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGTAG 18878 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || ||||||||||| ||| | | || |||||||||| ||| | ||| || | Sbjct 18879 ATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGTGG 18938 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTG 119483 || ||||| |||||||| || || || | |||||| |||| | | |||||| | Sbjct 18939 GGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGACATCAAG 18998 Query 119484 TCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542 | ||||||||| | || || | ||||| ||||| || |||| | || ||||| Sbjct 18999 TTGTAGGTCTCGATAGCACGCTTG-ATGTCGGGTCCGTGGATGCCGACGGCAACGCGCAT 19057 Query 119543 AAACATGT 119550 | ||||| Sbjct 19058 GAGCATGT 19065 >seq100 Length=52976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 130060 CGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGA 130119 ||||||| ||||| ||||||||||| |||||||| | |||||| || | || || Sbjct 52958 CGAGAAGGTGAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAACGA 52899 Query 130120 GCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA---GGA 130176 ||| ||||||||||| ||||| || |||||||| | || || ||| |||| ||| Sbjct 52898 GCCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACCAAAGATGGA 52839 Query 130177 GCGGGACTTTGTATCA-AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGA 130235 ||| | || | | |||| ||| ||||| | ||||| |||| ||| || |||| Sbjct 52838 CCGG----TCGTCCGAGATCCACCGCATAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGA 52783 Query 130236 CGGT 130239 | || Sbjct 52782 CTGT 52779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427206725040