Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq985 123 3e-23 seq100 87.8 2e-12 >seq985 Length=76026 Score = 123 bits (136), Expect = 3e-23 Identities = 480/742 (65%), Gaps = 23/742 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||||| ||| |||| || || || ||||| | || Sbjct 19072 CCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCACGGACCCGACATCAAGCGTGCT 19013 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || |||||| | | |||| |||||| | || || || ||| Sbjct 19012 ATCGAGACCTACAACTTGATGTCGGAGCGCTACTTCACTCACGCGTCGCCCACGCTGTTC 18953 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || ||||| || || ||| | || |||||||| || ||| |||| ||| Sbjct 18952 AACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGCAGGACGAC 18893 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | || |||| ||||| ||| || || Sbjct 18892 TCGATCGAAGGCATCTACGACACGCTCAAGACTTGCGCGCTCATCTCCAAGACTGCGGGC 18833 Query 104462 GGTATTGG------GATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGG 104514 || || || ||| |||| | || | | || || | ||||| ||| || Sbjct 18832 GGGATCGGTCTTTCGATTCACAAC-ATCC-GCGCGA-CCGGT-----TCGTACATCGCGG 18781 Query 104515 G-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || || | || | || || | || ||||| ||||| || ||| ||| |||| Sbjct 18780 GCACGAACGGCTACTCGAACGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCGC 18721 Query 104574 GCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 | || || | |||| || | ||| || | |||| |||| |||||||| | Sbjct 18720 GTTACGTGGACCAAGGAGGCAATAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCGT 18661 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 |||||||||| ||| | || ||||| || | || ||||| || | || || | | Sbjct 18660 GGCACGCGGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAAGAAGAAGTCC 18601 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | || || ||||||| ||| || ||||| || || ||||||||| | | || ||| Sbjct 18600 GCGCGCGAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTCTTCATGGAACGCGTCGAGC 18541 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| | | | ||| | || || || || | | | || || || ||| ||| | | | Sbjct 18540 AGAACGCCGAGTGGCCGCTGTTCTGCCCCGCCGAAGCGCCCGGCCTCCACGAGGTCTACG 18481 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACG 104869 | || ||||| || |||| | ||||||||| | || ||||| || | ||| ||| Sbjct 18480 GCGACGAGTTCAGGGCGCTTTTCGAGAAGTACGAGAAGGAGGGTCGCGCCA-AGCGCACG 18422 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | || || || | ||||| | || |||||| | | || ||||| || | || Sbjct 18421 ATCTCGGC-GCAGAAGCTGTGGTACGCCATTCTCGAAGCCCAGGTTGAGACGGGCAATCC 18363 Query 104929 ATACATGCTTTACAAAGACGCC 104950 | |||||| ||||| |||||| Sbjct 18362 CTTCATGCTCTACAAGGACGCC 18341 >seq100 Length=52976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 ||||| || || || | ||||| || || ||||||||| |||| | | | | | Sbjct 52779 ACAGTCCCCTGCATCAAGAAGAAGGCCGACTGGGCTATGCGGTGGATC--TCGGACGACC 52836 Query 94792 CGTTC--CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 || | ||||| ||| || || |||| || || || ||||| ||||||||||| | Sbjct 52837 GGTCCATCTTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGG 52896 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | || ||| | | || | |||||||||||||| ||||||||||| |||||| ||||| Sbjct 52897 GCTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCACCTTCT 52956 Query 94910 C 94910 | Sbjct 52957 C 52957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253261354160