Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq985 352 3e-92 seq100 84.2 2e-11 >seq985 Length=76026 Score = 352 bits (390), Expect = 3e-92 Identities = 524/736 (71%), Gaps = 8/736 (1%) Strand=Plus/Plus Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229 ||||||||||||| |||| | || | || ||||||||||| | ||||| | ||| Sbjct 18341 GGCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATGGCGTA 18400 Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGG 79287 ||| | | | | ||| || | | | | ||| ||||||| ||||| || | Sbjct 18401 CCACAGCTTCTGCGCC--GAGATCGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCG 18458 Query 79288 TACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGG-CA 79346 | | | | |||| | || || ||||| ||| | ||||| |||| || ||||| || Sbjct 18459 AAAAGCGCCCTGAACTCGTCGCCGTAGACCTCGTGGAGGCC-GGGCGCTTCGGCGGGGCA 18517 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 | ||| |||| || ||| || ||| || |||||||||||||| ||||||||||| Sbjct 18518 GAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCACAG 18577 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 || ||||||||| || || | || || | ||| |||||| || || ||||| Sbjct 18578 CGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGGTCGAG 18637 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 ||||| | |||||| |||||||||||||| || ||||| ||||||| || ||||| Sbjct 18638 GAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTT 18697 Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586 ||| || |||| ||||| || |||||||||||||| || |||||||| |||||||| Sbjct 18698 ATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGAT 18757 Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA 79646 ||||| | | ||||||||| || ||| | |||| |||| || ||||| | | | Sbjct 18758 GCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGGATGTT-GTGAA 18816 Query 79647 GTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 | | ||||| || || | |||||||||| ||||||| ||||||||| |||| Sbjct 18817 TCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGT 18876 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765 ||||||| |||||||||||||||| ||| | ||| ||||||||| ||| | || |||| Sbjct 18877 AGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGT 18936 Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCA 79825 | |||||||||||||| || || |||| |||||| |||||| | | ||||| Sbjct 18937 GGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGACATCA 18996 Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885 | ||| ||||| | | ||| || |||| |||||||||||||| || ||||||| Sbjct 18997 AGTTGTAGGTCTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACGGCAACGCGCA 19056 Query 79886 TGAAGAGGTACTGGGG 79901 ||| | || ||| || Sbjct 19057 TGAGCATGTGCTGAGG 19072 Score = 316 bits (350), Expect = 2e-81 Identities = 518/741 (70%), Gaps = 4/741 (1%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | ||||||| || || ||||||||||| || |||| || ||| | Sbjct 19072 CCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCACGGACCCGACATCAAGCGTGCT 19013 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| ||| || ||||| || | |||||| |||||| |||| || || ||| Sbjct 19012 ATCGAGACCTACAACTTGATGTCGGAGCGCTACTTCACTCACGCGTCGCCCACGCTGTTC 18953 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 ||||||||||| | ||||||| | ||| ||| ||||| || | ||| |||| ||| Sbjct 18952 AACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGCAGGACGAC 18893 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || || ||||||||||| ||||||||| ||||||| |||||||||| | || Sbjct 18892 TCGATCGAAGGCATCTACGACACGCTCAAGACTTGCGCGCTCATCTCCAAGACTGCGGGC 18833 Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| | | | | | || ||||| ||| ||| | ||| || ||||| Sbjct 18832 GGGATCGGTCTTTCGATTCAC-AACATCCGCGCGACCGGTTCGTACATCGCGGGCACGAA 18774 Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 ||| || ||| ||| ||||| || |||||||||||||||||||||||||| | |||| Sbjct 18773 CGGC-TACTCGAACGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCGCGTTACG 18715 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 | |||| || ||| || || ||| ||||||| |||||||| ||||| ||||||| Sbjct 18714 TGGACCAAGGAGGCAATAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCGTGGCACG 18655 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 ||||| || | || |||||||| || ||| |||||| || | || || | ||| | Sbjct 18654 CGGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAAGAAGAAGTCCGCGCGC 18595 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 | ||||||||| || ||||||| || ||||| |||||||| || ||| || ||| Sbjct 18594 GAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTCTTCATGGAACGCGTCGAGCAGAACG 18535 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700 || |||| ||| | ||||| |||| || ||||| | ||| ||||||||||| | Sbjct 18534 CCGAGTGGCCGCTGTTCTGCCCCGCCGAAGCGCCCGGCCTCCACGAGGTCTACGGCGACG 18475 Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760 ||||| | | | | | || |||| |||| || |||| | || || Sbjct 18474 AGTTCAGGGCGCTTTTCGAGAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACGATCTCGG 18415 Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820 | | | | | ||| || | | ||| || |||||| ||||| |||| || | |||| Sbjct 18414 CGCAGAAGCTGTGGTACGCCATTCTCGAAGCCCAGGTTGAGACGGGCAATCCCTTCATGC 18355 Query 19821 GCTACAAGGACGCCGCGAACG 19841 ||||||||||||||| |||| Sbjct 18354 TCTACAAGGACGCCGCCAACG 18334 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 78204 CATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAG 78263 |||||| |||||||| ||||| ||||| || || | |||||| |||| |||| |||| Sbjct 17131 CATGCCGGTCTTGAGTCCCTTTTTCCAGCCATAGAAGTGCATGCTCGTGAGCTGCGCCAT 17190 Query 78264 ACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTC 78323 |||| | ||||||||||||||| |||||||||||| | || || ||||| Sbjct 17191 GGTCGGCGAGGAGAGATGGATGTTGAGCGACTGCGACTGGTCGATGAAAGCTCCACGGTC 17250 Query 78324 GGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTT 78383 |||||||| ||||||||| ||| |||| ||| ||||||| |||| ||| || ||| Sbjct 17251 GGCCGCCAGGTCGATGACGACCTTCTGCGAAATTTCCCAGACGGTCTTGTAGATCCTCTT 17310 Query 78384 CAGCTCTTCCTGGATGT 78400 || || || |||||| Sbjct 17311 CAATTCGTCGGGGATGT 17327 Score = 114 bits (126), Expect = 1e-20 Identities = 132/176 (75%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 20627 ATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGC 20686 || |||| |||||| |||||||| | |||||| | |||||||| |||||||||| || Sbjct 17304 ATCTACAAGACCGTCTGGGAAATTTCGCAGAAGGTCGTCATCGACCTGGCGGCCGACCGT 17245 Query 20687 GGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAAT--CCGAGCCTGG 20744 || || | |||||||||||| ||||||||||| || ||| | |||| | ||| Sbjct 17244 GGAGCTTTCATCGACCAGTCGCAGTCGCTCAACATC--CATCTCTCCTCGCCGACCATGG 17187 Query 20745 CGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATG 20800 || |||| | |||||| | || |||||| | ||||| |||||||| |||||| Sbjct 17186 CGCAGCTCACGAGCATGCACTTCTATGGCTGGAAAAAGGGACTCAAGACCGGCATG 17131 Score = 93.3 bits (102), Expect = 5e-14 Identities = 183/267 (69%), Gaps = 18/267 (7%) Strand=Plus/Plus Query 78819 GTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGC 78878 |||||||| || || | | | |||||| | || | ||| ||||||| | ||||| Sbjct 17851 GTTGAGCTGACGGGCTTCCGGCGAGTCGAAGGGCAGACGGAGGGCCATGAAGGCGTCGGC 17910 Query 78879 CAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTC 78938 || || || ||||| | | ||||||| |||||||||||||||| |||| ||||||| Sbjct 17911 GAGACCTTGCACGCCCACACCGATCGGGCGGTGGCGCATGTTGC---TTCGCTCCGCCTC 17967 Query 78939 ---GGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGT 78995 | ||||| |||| ||||||| |||||| ||||| | ||||||| Sbjct 17968 CTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTGAGGTTGTAGGCGACGACCTTGAC 18027 Query 78996 CACCTCGTACAATTTGGCGAAATC--AAAATGATTTCCTTTGATGAAAGTCGGTAGGCAC 79053 || |||| ||| || |||||| | | ||| |||||||| | ||| || Sbjct 18028 GACGTCGTGCAACTTCTGGAAATCGTACTCTCCGTTC--TTGATGAAGGACGGGAG---- 18081 Query 79054 AGCGAT----GCCAGGTTGCACACGGC 79076 |||||| ||||||||||||||||| Sbjct 18082 AGCGATGGAGGCCAGGTTGCACACGGC 18108 >seq100 Length=52976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/178 (71%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT----GAGTCCTGGAG 59967 |||||| ||| | || | || || || ||||| |||| |||||| || | || Sbjct 52782 GTCCCCTGCA-TCAAGAAGAAGGCCGACTGGGCTATGCGGTGGATCTCGGACGACCGGTC 52840 Query 59968 CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCT 60027 |||| |||| |||| || | || || || ||| || || ||||||||||| |||| Sbjct 52841 CATC-TTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCT 52899 Query 60028 CGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 ||||| | || ||||||||||| ||||| || ||||||||||| || | ||||| Sbjct 52900 CGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCACCTTCTC 52957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517710316960