Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq985 352 3e-92
seq100 84.2 2e-11
>seq985
Length=76026
Score = 352 bits (390), Expect = 3e-92
Identities = 524/736 (71%), Gaps = 8/736 (1%)
Strand=Plus/Plus
Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229
||||||||||||| |||| | || | || ||||||||||| | ||||| | |||
Sbjct 18341 GGCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAATGGCGTA 18400
Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGG 79287
||| | | | | ||| || | | | | ||| ||||||| ||||| || |
Sbjct 18401 CCACAGCTTCTGCGCC--GAGATCGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCG 18458
Query 79288 TACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGG-CA 79346
| | | | |||| | || || ||||| ||| | ||||| |||| || ||||| ||
Sbjct 18459 AAAAGCGCCCTGAACTCGTCGCCGTAGACCTCGTGGAGGCC-GGGCGCTTCGGCGGGGCA 18517
Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406
| ||| |||| || ||| || ||| || |||||||||||||| |||||||||||
Sbjct 18518 GAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATCCACAG 18577
Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466
|| ||||||||| || || | || || | ||| |||||| || || |||||
Sbjct 18578 CGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGGTCGAG 18637
Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526
||||| | |||||| |||||||||||||| || ||||| ||||||| || |||||
Sbjct 18638 GAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTT 18697
Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586
||| || |||| ||||| || |||||||||||||| || |||||||| ||||||||
Sbjct 18698 ATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGAT 18757
Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA 79646
||||| | | ||||||||| || ||| | |||| |||| || ||||| | | |
Sbjct 18758 GCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGGATGTT-GTGAA 18816
Query 79647 GTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705
| | ||||| || || | |||||||||| ||||||| ||||||||| ||||
Sbjct 18817 TCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGT 18876
Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765
||||||| |||||||||||||||| ||| | ||| ||||||||| ||| | || ||||
Sbjct 18877 AGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGT 18936
Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCA 79825
| |||||||||||||| || || |||| |||||| |||||| | | |||||
Sbjct 18937 GGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGACATCA 18996
Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885
| ||| ||||| | | ||| || |||| |||||||||||||| || |||||||
Sbjct 18997 AGTTGTAGGTCTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACGGCAACGCGCA 19056
Query 79886 TGAAGAGGTACTGGGG 79901
||| | || ||| ||
Sbjct 19057 TGAGCATGTGCTGAGG 19072
Score = 316 bits (350), Expect = 2e-81
Identities = 518/741 (70%), Gaps = 4/741 (1%)
Strand=Plus/Minus
Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162
|||||| || | ||||||| || || ||||||||||| || |||| || ||| |
Sbjct 19072 CCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCACGGACCCGACATCAAGCGTGCT 19013
Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222
|||||| ||| || ||||| || | |||||| |||||| |||| || || |||
Sbjct 19012 ATCGAGACCTACAACTTGATGTCGGAGCGCTACTTCACTCACGCGTCGCCCACGCTGTTC 18953
Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282
||||||||||| | ||||||| | ||| ||| ||||| || | ||| |||| |||
Sbjct 18952 AACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGCAGGACGAC 18893
Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342
|| || ||||||||||| ||||||||| ||||||| |||||||||| | ||
Sbjct 18892 TCGATCGAAGGCATCTACGACACGCTCAAGACTTGCGCGCTCATCTCCAAGACTGCGGGC 18833
Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401
|| ||||| | | | | | || ||||| ||| ||| | ||| || |||||
Sbjct 18832 GGGATCGGTCTTTCGATTCAC-AACATCCGCGCGACCGGTTCGTACATCGCGGGCACGAA 18774
Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460
||| || ||| ||| ||||| || |||||||||||||||||||||||||| | ||||
Sbjct 18773 CGGC-TACTCGAACGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCGCGTTACG 18715
Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520
| |||| || ||| || || ||| ||||||| |||||||| ||||| |||||||
Sbjct 18714 TGGACCAAGGAGGCAATAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCGTGGCACG 18655
Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580
||||| || | || |||||||| || ||| |||||| || | || || | ||| |
Sbjct 18654 CGGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAAGAAGAAGTCCGCGCGC 18595
Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640
| ||||||||| || ||||||| || ||||| |||||||| || ||| || |||
Sbjct 18594 GAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTCTTCATGGAACGCGTCGAGCAGAACG 18535
Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700
|| |||| ||| | ||||| |||| || ||||| | ||| ||||||||||| |
Sbjct 18534 CCGAGTGGCCGCTGTTCTGCCCCGCCGAAGCGCCCGGCCTCCACGAGGTCTACGGCGACG 18475
Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760
||||| | | | | | || |||| |||| || |||| | || ||
Sbjct 18474 AGTTCAGGGCGCTTTTCGAGAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACGATCTCGG 18415
Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820
| | | | | ||| || | | ||| || |||||| ||||| |||| || | ||||
Sbjct 18414 CGCAGAAGCTGTGGTACGCCATTCTCGAAGCCCAGGTTGAGACGGGCAATCCCTTCATGC 18355
Query 19821 GCTACAAGGACGCCGCGAACG 19841
||||||||||||||| ||||
Sbjct 18354 TCTACAAGGACGCCGCCAACG 18334
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 78204 CATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAG 78263
|||||| |||||||| ||||| ||||| || || | |||||| |||| |||| ||||
Sbjct 17131 CATGCCGGTCTTGAGTCCCTTTTTCCAGCCATAGAAGTGCATGCTCGTGAGCTGCGCCAT 17190
Query 78264 ACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTC 78323
|||| | ||||||||||||||| |||||||||||| | || || |||||
Sbjct 17191 GGTCGGCGAGGAGAGATGGATGTTGAGCGACTGCGACTGGTCGATGAAAGCTCCACGGTC 17250
Query 78324 GGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTT 78383
|||||||| ||||||||| ||| |||| ||| ||||||| |||| ||| || |||
Sbjct 17251 GGCCGCCAGGTCGATGACGACCTTCTGCGAAATTTCCCAGACGGTCTTGTAGATCCTCTT 17310
Query 78384 CAGCTCTTCCTGGATGT 78400
|| || || ||||||
Sbjct 17311 CAATTCGTCGGGGATGT 17327
Score = 114 bits (126), Expect = 1e-20
Identities = 132/176 (75%), Gaps = 4/176 (2%)
Strand=Plus/Minus
Query 20627 ATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGC 20686
|| |||| |||||| |||||||| | |||||| | |||||||| |||||||||| ||
Sbjct 17304 ATCTACAAGACCGTCTGGGAAATTTCGCAGAAGGTCGTCATCGACCTGGCGGCCGACCGT 17245
Query 20687 GGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAAT--CCGAGCCTGG 20744
|| || | |||||||||||| ||||||||||| || ||| | |||| | |||
Sbjct 17244 GGAGCTTTCATCGACCAGTCGCAGTCGCTCAACATC--CATCTCTCCTCGCCGACCATGG 17187
Query 20745 CGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATG 20800
|| |||| | |||||| | || |||||| | ||||| |||||||| ||||||
Sbjct 17186 CGCAGCTCACGAGCATGCACTTCTATGGCTGGAAAAAGGGACTCAAGACCGGCATG 17131
Score = 93.3 bits (102), Expect = 5e-14
Identities = 183/267 (69%), Gaps = 18/267 (7%)
Strand=Plus/Plus
Query 78819 GTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGC 78878
|||||||| || || | | | |||||| | || | ||| ||||||| | |||||
Sbjct 17851 GTTGAGCTGACGGGCTTCCGGCGAGTCGAAGGGCAGACGGAGGGCCATGAAGGCGTCGGC 17910
Query 78879 CAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTC 78938
|| || || ||||| | | ||||||| |||||||||||||||| |||| |||||||
Sbjct 17911 GAGACCTTGCACGCCCACACCGATCGGGCGGTGGCGCATGTTGC---TTCGCTCCGCCTC 17967
Query 78939 ---GGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGT 78995
| ||||| |||| ||||||| |||||| ||||| | |||||||
Sbjct 17968 CTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTGAGGTTGTAGGCGACGACCTTGAC 18027
Query 78996 CACCTCGTACAATTTGGCGAAATC--AAAATGATTTCCTTTGATGAAAGTCGGTAGGCAC 79053
|| |||| ||| || |||||| | | ||| |||||||| | ||| ||
Sbjct 18028 GACGTCGTGCAACTTCTGGAAATCGTACTCTCCGTTC--TTGATGAAGGACGGGAG---- 18081
Query 79054 AGCGAT----GCCAGGTTGCACACGGC 79076
|||||| |||||||||||||||||
Sbjct 18082 AGCGATGGAGGCCAGGTTGCACACGGC 18108
>seq100
Length=52976
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/178 (71%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT----GAGTCCTGGAG 59967
|||||| ||| | || | || || || ||||| |||| |||||| || | ||
Sbjct 52782 GTCCCCTGCA-TCAAGAAGAAGGCCGACTGGGCTATGCGGTGGATCTCGGACGACCGGTC 52840
Query 59968 CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCT 60027
|||| |||| |||| || | || || || ||| || || ||||||||||| ||||
Sbjct 52841 CATC-TTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCT 52899
Query 60028 CGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085
||||| | || ||||||||||| ||||| || ||||||||||| || | |||||
Sbjct 52900 CGTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCACCTTCTC 52957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548517710316960
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